|Framework for the statistical shape analysis of brain structures using SPHARM-PDM|
M Styner, I Oguz, S Xu, C Brechbühler, D Pantazis, JJ Levitt, ME Shenton, ...
Medical image computing and computer-assisted intervention: MICCAI …, 2006
|DTIPrep: quality control of diffusion-weighted images|
I Oguz, M Farzinfar, J Matsui, F Budin, Z Liu, G Gerig, HJ Johnson, ...
Frontiers in neuroinformatics 8, 4, 2014
|Information Processing in Medical Imaging|
I Oguz, M Niethammer, J Cates, R Whitaker, T Fletcher, C Vachet, ...
Berlin: Springer, 2009
|Ethanol-induced face-brain dysmorphology patterns are correlative and exposure-stage dependent|
RJ Lipinski, P Hammond, SK O’Leary-Moore, JJ Ament, SJ Pecevich, ...
PLoS One 7 (8), e43067, 2012
|Particle-guided image registration|
J Lee, I Lyu, İ Oğuz, MA Styner
International Conference on Medical Image Computing and Computer-Assisted …, 2013
|Adolescent binge ethanol treatment alters adult brain regional volumes, cortical extracellular matrix protein and behavioral flexibility|
LG Coleman Jr, W Liu, I Oguz, M Styner, FT Crews
Pharmacology Biochemistry and Behavior 116, 142-151, 2014
|Computed tomography predictors of response to endobronchial valve lung reduction treatment. Comparison with Chartis|
M Schuhmann, P Raffy, Y Yin, D Gompelmann, I Oguz, R Eberhardt, ...
American journal of respiratory and critical care medicine 191 (7), 767-774, 2015
|Mechanically Induced Focal Adhesion Assembly Amplifies Anti‐Adipogenic Pathways in Mesenchymal Stem Cells|
B Sen, C Guilluy, Z Xie, N Case, M Styner, J Thomas, I Oguz, C Rubin, ...
STEM CELLS 29 (11), 1829-1836, 2011
|Statistical group differences in anatomical shape analysis using Hotelling T2 metric|
M Styner, I Oguz, S Xu, D Pantazis, G Gerig
Medical Imaging, 65123Z-65123Z-11, 2007
|RATS: Rapid Automatic Tissue Segmentation in rodent brain MRI|
I Oguz, H Zhang, A Rumple, M Sonka
Journal of neuroscience methods 221, 175-182, 2014
|Implementing the automatic generation of 3D statistical shape models with ITK|
T Heimann, I Oguz, I Wolf, M Styner, HP Meinzer
The Insight Journal—MICCAI Open Science Workshop, Copenhagen, 2006
|Postnatal day 7 ethanol treatment causes persistent reductions in adult mouse brain volume and cortical neurons with sex specific effects on neurogenesis|
LG Coleman Jr, I Oguz, J Lee, M Styner, FT Crews
Alcohol 46 (6), 603-612, 2012
|Comparison of Magnetic Resonance Imaging in Live vs. Post Mortem Rat Brains|
I Oguz, R Yaxley, F Budin, M Hoogstoel, J Lee, E Maltbie, W Liu, ...
PLOS ONE 8 (8), e71027, 2013
|Cortical correspondence using entropy-based particle systems and local features|
I Oguz, J Cates, T Fletcher, R Whitaker, D Cool, S Aylward, M Styner
Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE …, 2008
|Brain abnormalities in bipolar disorder detected by quantitative T1ρ mapping|
CP Johnson, RL Follmer, I Oguz, LA Warren, GE Christensen, ...
Molecular psychiatry 20 (2), 201-206, 2015
|Magnetic resonance microscopy-based analyses of the neuroanatomical effects of gestational day 9 ethanol exposure in mice|
SE Parnell, HT Holloway, SK O'Leary-Moore, DB Dehart, B Paniaqua, ...
Neurotoxicology and teratology 39, 77-83, 2013
|User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP|
PA Yushkevich, A Pashchinskiy, I Oguz, S Mohan, JE Schmitt, JM Stein, ...
Neuroinformatics 17 (1), 83-102, 2019
|3-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain|
A Rumple, M McMurray, J Johns, J Lauder, P Makam, M Radcliffe, I Oguz
PLOS ONE 8 (7), e67334, 2013
|LOGISMOS-B: layered optimal graph image segmentation of multiple objects and surfaces for the brain|
I Oguz, M Sonka
Medical Imaging, IEEE Transactions on 33 (6), 1220-1235, 2014
|Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics|
F Budin, M Hoogstoel, P Reynolds, M Grauer, SK O'Leary-Moore, I Oguz
Front. Neuroinform 7 (15), 10.3389, 2013