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Yu Zhang
Yu Zhang
Associate Professor of Statistics, The Pennsylvania State University
Verified email at psu.edu - Homepage
Title
Cited by
Cited by
Year
Galaxy: a platform for interactive large-scale genome analysis
B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ...
Genome research 15 (10), 1451-1455, 2005
25542005
In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
Y Ding, Y Tang, CK Kwok, Y Zhang, PC Bevilacqua, SM Assmann
Nature 505 (7485), 696-700, 2014
8082014
Bayesian inference of epistatic interactions in case-control studies
Y Zhang, JS Liu
Nature genetics 39 (9), 1167-1173, 2007
5892007
Complete Khoisan and Bantu genomes from southern Africa
SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ...
Nature 463 (7283), 943-947, 2010
5242010
Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil)
W Miller, VM Hayes, A Ratan, DC Petersen, NE Wittekindt, J Miller, ...
Proceedings of the National Academy of Sciences 108 (30), 12348-12353, 2011
2652011
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
W Wu, Y Cheng, CA Keller, J Ernst, SA Kumar, T Mishra, C Morrissey, ...
Genome research 21 (10), 1659-1671, 2011
1472011
The changing mouse embryo transcriptome at whole tissue and single-cell resolution
P He, BA Williams, D Trout, GK Marinov, H Amrhein, L Berghella, ST Goh, ...
Nature 583 (7818), 760-767, 2020
1272020
Alignment of optical maps
A Valouev, L Li, YC Liu, DC Schwartz, Y Yang, Y Zhang, MS Waterman
Journal of Computational Biology 13 (2), 442-462, 2006
1102006
Jointly characterizing epigenetic dynamics across multiple human cell types
Y Zhang, L An, F Yue, RC Hardison
Nucleic acids research 44 (14), 6721-6731, 2016
882016
PheWAS and beyond: the landscape of associations with medical diagnoses and clinical measures across 38,662 individuals from Geisinger
A Verma, A Lucas, SS Verma, Y Zhang, N Josyula, A Khan, DN Hartzel, ...
The American Journal of Human Genetics 102 (4), 592-608, 2018
742018
OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries
L An, T Yang, J Yang, J Nuebler, G Xiang, RC Hardison, Q Li, Y Zhang
Genome biology 20, 1-16, 2019
622019
Calling SNPs without a reference sequence
A Ratan, Y Zhang, VM Hayes, SC Schuster, W Miller
BMC bioinformatics 11, 1-13, 2010
602010
A novel bayesian graphical model for genome‐wide multi‐SNP association mapping
Y Zhang
Genetic epidemiology 36 (1), 36-47, 2012
582012
Human-disease phenotype map derived from PheWAS across 38,682 individuals
A Verma, L Bang, JE Miller, Y Zhang, MTM Lee, Y Zhang, ...
The American Journal of Human Genetics 104 (1), 55-64, 2019
552019
An Eulerian path approach to global multiple alignment for DNA sequences
Y Zhang, MS Waterman
Journal of Computational Biology 10 (6), 803-819, 2003
462003
Accurate and reproducible functional maps in 127 human cell types via 2D genome segmentation
Y Zhang, RC Hardison
Nucleic acids research 45 (17), 9823-9836, 2017
452017
An Eulerian path approach to local multiple alignment for DNA sequences
Y Zhang, MS Waterman
Proceedings of the National Academy of Sciences 102 (5), 1285-1290, 2005
432005
Refinement of optical map assemblies
A Valouev, Y Zhang, DC Schwartz, MS Waterman
Bioinformatics 22 (10), 1217-1224, 2006
422006
Block-based Bayesian epistasis association mapping with application to WTCCC type 1 diabetes data
Y Zhang, J Zhang, JS Liu
The annals of applied statistics 5 (3), 2052, 2011
352011
An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis
G Xiang, CA Keller, E Heuston, BM Giardine, L An, AQ Wixom, A Miller, ...
Genome research 30 (3), 472-484, 2020
342020
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