Andre Kahles
Andre Kahles
Department of Computer Science, ETH Zurich, Switzerland
Verified email at inf.ethz.ch
TitleCited byYear
The molecular taxonomy of primary prostate cancer
CGAR Network
Cell 163 (4), 1011-1025, 2015
911*2015
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ...
Nature 477 (7365), 419, 2011
5462011
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, M Akerman, T Alioto, ...
Nature methods 10 (12), 1177, 2013
4242013
Systematic evaluation of spliced alignment programs for RNA-seq data
PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, T Alioto, J Behr, ...
Nature methods 10 (12), 1185, 2013
3872013
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, FP Casale, ...
elife 4, e05255, 2015
2112015
Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome
G Drechsel, A Kahles, AK Kesarwani, E Stauffer, J Behr, P Drewe, ...
The Plant Cell 25 (10), 3726-3742, 2013
1122013
Comprehensive analysis of alternative splicing across tumors from 8,705 patients
A Kahles, KV Lehmann, NC Toussaint, M Hüser, SG Stark, ...
Cancer cell 34 (2), 211-224. e6, 2018
882018
RNA‐Seq read alignments with PALMapper
G Jean, A Kahles, VT Sreedharan, FD Bona, G Rätsch
Current protocols in bioinformatics 32 (1), 11.6. 1-11.6. 37, 2010
752010
Polypyrimidine tract binding protein homologs from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes
C Rühl, E Stauffer, A Kahles, G Wagner, G Drechsel, G Rätsch, A Wachter
The Plant Cell 24 (11), 4360-4375, 2012
592012
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
J Behr, A Kahles, Y Zhong, VT Sreedharan, P Drewe, G Rätsch
Bioinformatics 29 (20), 2529-2538, 2013
522013
Accurate detection of differential RNA processing
P Drewe, O Stegle, L Hartmann, A Kahles, R Bohnert, A Wachter, ...
Nucleic acids research 41 (10), 5189-5198, 2013
452013
SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data
A Kahles, CS Ong, Y Zhong, G Rätsch
Bioinformatics, btw076, 2016
392016
Alternative splicing substantially diversifies the transcriptome during early photomorphogenesis and correlates with the energy availability in Arabidopsis
L Hartmann, P Drewe-Boß, T Wießner, G Wagner, S Geue, HC Lee, ...
The Plant Cell 28 (11), 2715-2734, 2016
272016
MMR: a tool for read multi-mapper resolution
A Kahles, J Behr, G Rätsch
Bioinformatics 32 (5), 770-772, 2015
272015
Hierarchical multitask structured output learning for large-scale sequence segmentation
N Görnitz, C Widmer, G Zeller, A Kahles, G Rätsch, S Sonnenburg
Advances in Neural Information Processing Systems, 2690-2698, 2011
262011
Genome graphs
AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ...
bioRxiv, 101378, 2017
222017
Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes
E Rheinbay, MM Nielsen, F Abascal, G Tiao, H Hornshøj, JM Hess, ...
bioRxiv, 237313, 2017
162017
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, R Bohnert, P Drewe, ...
Bioinformatics 30 (9), 1300-1301, 2014
122014
Dynamic compression schemes for graph coloring
H Mustafa, I Schilken, M Karasikov, C Eickhoff, G Rätsch, A Kahles
Bioinformatics 35 (3), 407-414, 2018
102018
Genomic rearrangements in Arabidopsis considered as quantitative traits
M Imprialou, A Kahles, JG Steffen, EJ Osborne, X Gan, J Lempe, ...
Genetics 205 (4), 1425-1441, 2017
82017
The system can't perform the operation now. Try again later.
Articles 1–20