Xavier Didelot

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Daniel FalushInstitute Pasteur ShanghaiVerified email at ips.ac.cn
Daniel J WilsonUniversity of OxfordVerified email at bdi.ox.ac.uk
Sarah WalkerProfessor of Medical Statistics and Epidemiology, Oxford University and University College LondonVerified email at ndm.ox.ac.uk
Rory BowdenWalter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Tanya GolubchikBig Data Institute, Oxford UniversityVerified email at bdi.ox.ac.uk
David EyreUniversity of OxfordVerified email at bdi.ox.ac.uk
Mark Achtman FRSProfessor Warwick Medical School, previously University College Cork and Max-Planck InstituteVerified email at warwick.ac.uk
Martin C. J. MaidenProfessor of Molecular Epidemiology, University of OxfordVerified email at zoo.ox.ac.uk
Keith JolleyUniversity of OxfordVerified email at zoo.ox.ac.uk
Sandeep J. JosephDivision of STD Prevention, CDCVerified email at cdc.gov
Samuel K. SheppardThe Milner Centre for Evolution, University of Bath, United KingdomVerified email at bath.ac.uk
Caroline ColijnSimon Fraser University, Department of MathematicsVerified email at sfu.ca
Guillaume MéricCBSGI, Baker Heart & Diabetes Institute + Monash University CCSVerified email at baker.edu.au
Timothy D ReadEmory UniversityVerified email at emory.edu
Deborah DeanProfessor, UCSF; Faculty, UCSF-UCBerkeley Graduate Program in Bioengineering; Director, Children'sVerified email at chori.org
Richard G. EverittUniversity of WarwickVerified email at warwick.ac.uk
Aaron DarlingProfessor of computational (meta)genomics, University of Technology SydneyVerified email at uts.edu.au
Lilith K WhittlesPostdoctoral researcher, Imperial College LondonVerified email at imperial.ac.uk
Sylvain BrisseInstitut Pasteur, Biodiversity and Epidemiology of Bacterial PathogensVerified email at pasteur.fr
François-Xavier WeillProfessor, Institut Pasteur, Paris, FranceVerified email at pasteur.fr

Xavier Didelot

University of Warwick

Verified email at warwick.ac.uk - Homepage

Evolution Microbiology Genomics


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Inference of bacterial microevolution using multilocus sequence data X Didelot, D Falush Genetics 175 (3), 1251-1266, 2007	715	2007
Transforming clinical microbiology with bacterial genome sequencing X Didelot, R Bowden, DJ Wilson, TEA Peto, DW Crook Nature Reviews Genetics 13 (9), 601-612, 2012	687	2012
Diverse sources of C. difficile infection identified on whole-genome sequencing DW Eyre, ML Cule, DJ Wilson, D Griffiths, A Vaughan, L O'Connor, CLC Ip, ... N Engl J Med 369, 1195-1205, 2013	603	2013
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica M Achtman, J Wain, FX Weill, S Nair, Z Zhou, V Sangal, MG Krauland, ... PLoS Pathogens 8 (6), e1002776, 2012	531	2012
A comparison of homologous recombination rates in bacteria and archaea M Vos, X Didelot The ISME journal 3 (2), 199-208, 2008	498	2008
ClonalFrameML: efficient inference of recombination in whole bacterial genomes X Didelot, DJ Wilson PLoS computational biology 11 (2), e1004041, 2015	483	2015
Impact of recombination on bacterial evolution X Didelot, MCJ Maiden Trends in microbiology 18 (7), 315-322, 2010	308	2010
The global distribution and spread of the mobilized colistin resistance gene mcr-1 R Wang, L van Dorp, LP Shaw, P Bradley, Q Wang, X Wang, L Jin, ... Nature communications 9 (1), 1-9, 2018	304	2018
Within-host evolution of bacterial pathogens X Didelot, AS Walker, TE Peto, DW Crook, DJ Wilson Nature Reviews Microbiology 14 (3), 150-162, 2016	293	2016
A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance DW Eyre, T Golubchik, NC Gordon, R Bowden, P Piazza, EM Batty, ... BMJ open 2 (3), e001124, 2012	265	2012
Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease BC Young, T Golubchik, EM Batty, R Fung, H Larner-Svensson, ... Proceedings of the National Academy of Sciences, 2012	262	2012
Effects of control interventions on Clostridium difficile infection in England: an observational study KE Dingle, X Didelot, TP Quan, DW Eyre, N Stoesser, T Golubchik, ... The Lancet Infectious Diseases 17 (4), 411-421, 2017	245	2017
Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter SK Sheppard, X Didelot, G Meric, A Torralbo, KA Jolley, DJ Kelly, ... Proceedings of the national academy of sciences 110 (29), 11923-11927, 2013	242	2013
Helicobacter pylori genome evolution during human infection L Kennemann, X Didelot, T Aebischer, S Kuhn, B Drescher, M Droege, ... Proceedings of the National Academy of Sciences 108 (12), 5033, 2011	241	2011
Maternal high fat diet during pregnancy and lactation alters hepatic expression of insulin like growth factor-2 and key microRNAs in the adult offspring J Zhang, F Zhang, X Didelot, KD Bruce, FR Cagampang, M Vatish, ... BMC genomics 10 (1), 1-12, 2009	228	2009
Measurably evolving pathogens in the genomic era R Biek, OG Pybus, JO Lloyd-Smith, X Didelot Trends in ecology & evolution 30 (6), 306-313, 2015	193	2015
Patterns of Gene Flow Define Species of Thermophilic Archaea H Cadillo-Quiroz, X Didelot, NL Held, A Herrera, A Darling, ML Reno, ... PLoS Biology 10 (2), e1001265, 2012	193	2012
Bayesian inference of infectious disease transmission from whole-genome sequence data X Didelot, J Gardy, C Colijn Molecular biology and evolution 31 (7), 1869-1879, 2014	190	2014
Microevolutionary analysis of Clostridium difficile genomes to investigate transmission X Didelot, DW Eyre, M Cule, CLC Ip, MA Ansari, D Griffiths, A Vaughan, ... Genome biology 13 (12), 1-13, 2012	190	2012
Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data T Jombart, A Cori, X Didelot, S Cauchemez, C Fraser, N Ferguson PLoS computational biology 10 (1), e1003457, 2014	188	2014

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