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Zhixing Feng
Zhixing Feng
Assistant Professor, Xinhua Hospital Affiliated to Shanghai Jiao Tong University School of Medicine
Verified email at shsmu.edu.cn
Title
Cited by
Cited by
Year
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
L Wang, Z Feng, X Wang, X Wang, X Zhang
Bioinformatics 26 (1), 136-138, 2010
38282010
Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
G Fang, D Munera, DI Friedman, A Mandlik, MC Chao, O Banerjee, ...
Nature biotechnology 30 (12), 1232-1239, 2012
3782012
Epigenetic Switch Driven by DNA Inversions Dictates Phase Variation in Streptococcus pneumoniae
J Li, JW Li, Z Feng, J Wang, H An, Y Liu, Y Wang, K Wang, X Zhang, ...
PLoS pathogens 12 (7), e1005762, 2016
1132016
Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases
EE Schadt, O Banerjee, G Fang, Z Feng, WH Wong, X Zhang, A Kislyuk, ...
Genome research 23 (1), 129-141, 2013
1122013
Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic
Z Feng, G Fang, J Korlach, T Clark, K Luong, X Zhang, W Wong, E Schadt
PLoS computational biology 9 (3), e1002935, 2013
742013
Identifying differentially spliced genes from two groups of RNA-seq samples
W Wang, Z Qin, Z Feng, X Wang, X Zhang
Gene 518 (1), 164-170, 2013
702013
qDNAmod: a statistical model-based tool to reveal intercellular heterogeneity of DNA modification from SMRT sequencing data
Z Feng, J Li, JR Zhang, X Zhang
Nucleic acids research 42 (22), 13488-13499, 2014
272014
Detecting and phasing minor single-nucleotide variants from long-read sequencing data
Z Feng, J Clemente, B Wong, E Schadt
Nature Communications 12, 3032, 2021
222021
Transcriptional repressor PtvR regulates phenotypic tolerance to vancomycin in Streptococcus pneumoniae
X Liu, JW Li, Z Feng, Y Luo, JW Veening, JR Zhang
Journal of bacteriology 199 (14), 10.1128/jb. 00054-17, 2017
222017
A review on the processing and analysis of next-generation RNA-seq data
X Wang, XW Wang, LK Wang, ZX Feng, XG Zhang
Prog Biochem Biophys 5, 834-846, 2010
182010
Erratum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing (Nature Biotechnology (2012) 30 (1232-1239))
G Fang, D Munera, DI Friedman, A Mandlik, MC Chao, O Banerjee, ...
Nature biotechnology 31 (6), 566, 2013
52013
Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
G Fang, D Munera, DI Friedman, A Mandlik, MC Chao, O Banerjee, ...
Nature Biotechnology 31 (6), 566, 2013
22013
Correction: Corrigendum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing
G Fang, D Munera, DI Friedman, A Mandlik, MC Chao, O Banerjee, ...
Nature Biotechnology 31 (6), 566-566, 2013
2013
Detecting DNA Modifications from SMRT Sequencing Data by Modeling Sequence Context
Z Feng, G Fang, J Korlach, T Clark, K Luong
2013
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