| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 797 | 2018 |
| AREsite: a database for the comprehensive investigation of AU-rich elements AR Gruber, J Fallmann, F Kratochvill, P Kovarik, IL Hofacker Nucleic acids research 39 (suppl_1), D66-D69, 2010 | 194 | 2010 |
| Adipose tissue derived bacteria are associated with inflammation in obesity and type 2 diabetes L Massier, R Chakaroun, S Tabei, A Crane, KD Didt, J Fallmann, ... Gut 69 (10), 1796-1806, 2020 | 153 | 2020 |
| Recent advances in RNA folding J Fallmann, S Will, J Engelhardt, B Grüning, R Backofen, PF Stadler Journal of biotechnology 261, 97-104, 2017 | 86 | 2017 |
| AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements J Fallmann, V Sedlyarov, A Tanzer, P Kovarik, IL Hofacker Nucleic acids research 44 (D1), D90-D95, 2016 | 85 | 2016 |
| Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammation resolution V Sedlyarov, J Fallmann, F Ebner, J Huemer, L Sneezum, M Ivin, ... Molecular systems biology 12 (5), 868, 2016 | 83 | 2016 |
| In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactors FXR Sutandy, S Ebersberger, L Huang, A Busch, M Bach, HS Kang, ... Genome research 28 (5), 699-713, 2018 | 71 | 2018 |
| Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... Scientific reports 6 (1), 34589, 2016 | 62 | 2016 |
| The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy BA Grüning, J Fallmann, D Yusuf, S Will, A Erxleben, F Eggenhofer, ... Nucleic acids research 45 (W1), W560-W566, 2017 | 48 | 2017 |
| Accurate mapping of tRNA reads A Hoffmann, J Fallmann, E Vilardo, M Mörl, PF Stadler, F Amman Bioinformatics 34 (7), 1116-1124, 2018 | 44 | 2018 |
| Combined experimental and system-level analyses reveal the complex regulatory network of miR-124 during human neurogenesis LK Kutsche, DM Gysi, J Fallmann, K Lenk, R Petri, A Swiersy, SD Klapper, ... Cell systems 7 (4), 438-452. e8, 2018 | 43 | 2018 |
| ViennaNGS: A toolbox for building efficient next-generation sequencing analysis pipelines MT Wolfinger, J Fallmann, F Eggenhofer, F Amman F1000Research 4, 2015 | 38 | 2015 |
| RNA-bioinformatics: tools, services and databases for the analysis of RNA-based regulation R Backofen, J Engelhardt, A Erxleben, J Fallmann, B Grüning, U Ohler, ... Journal of biotechnology 261, 76-84, 2017 | 27 | 2017 |
| LOTTE-seq (Long hairpin oligonucleotide based tRNA high-throughput sequencing): specific selection of tRNAs with 3’-CCA end for high-throughput sequencing L Erber, A Hoffmann, J Fallmann, H Betat, PF Stadler, M Mörl RNA biology 17 (1), 23-32, 2020 | 24 | 2020 |
| Alzheimer-related genes show accelerated evolution A Nitsche, C Arnold, U Ueberham, K Reiche, J Fallmann, J Hackermüller, ... Molecular psychiatry 26 (10), 5790-5796, 2021 | 16 | 2021 |
| Circulating bacterial signature is linked to metabolic disease and shifts with metabolic alleviation after bariatric surgery RM Chakaroun, L Massier, A Heintz-Buschart, N Said, J Fallmann, ... Genome medicine 13 (1), 105, 2021 | 16 | 2021 |
| Common features in lncRNA annotation and classification: a survey C Klapproth, R Sen, PF Stadler, S Findeiß, J Fallmann Non-coding RNA 7 (4), 77, 2021 | 15 | 2021 |
| Automatic curation of large comparative animal MicroRNA datasets AM Yazbeck, PF Stadler, K Tout, J Fallmann Bioinformatics 35 (22), 4553-4559, 2019 | 10 | 2019 |
| The RNA workbench 2.0: next generation RNA data analysis J Fallmann, P Videm, A Bagnacani, B Batut, MA Doyle, T Klingstrom, ... Nucleic acids research 47 (W1), W511-W515, 2019 | 10 | 2019 |
| Intronic tRNAs of mitochondrial origin regulate constitutive and alternative splicing SM Hoser, A Hoffmann, A Meindl, M Gamper, J Fallmann, SH Bernhart, ... Genome biology 21, 1-35, 2020 | 9 | 2020 |
Peter F StadlerProfessor of Bioinformatics, Univ. LeipzigVerified email at bioinf.uni-leipzig.de
