Atina Cote
Atina Cote
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Determination and inference of eukaryotic transcription factor sequence specificity
MT Weirauch, A Yang, M Albu, AG Cote, A Montenegro-Montero, P Drewe, ...
Cell 158 (6), 1431-1443, 2014
A reference map of the human binary protein interactome
K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg, W Bian, R Brignall, ...
Nature 580 (7803), 402-408, 2020
The draft genome and transcriptome of Cannabis sativa
H Van Bakel, JM Stout, AG Cote, CM Tallon, AG Sharpe, TR Hughes, ...
Genome biology 12, 1-18, 2011
Evaluation of methods for modeling transcription factor sequence specificity
MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ...
Nature biotechnology 31 (2), 126-134, 2013
Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins
BRG Gordon, Y Li, A Cote, MT Weirauch, P Ding, TR Hughes, ...
Proceedings of the National Academy of Sciences 108 (26), 10690-10695, 2011
Exploring genetic suppression interactions on a global scale
J Van Leeuwen, C Pons, JC Mellor, TN Yamaguchi, H Friesen, ...
Science 354 (6312), aag0839, 2016
A framework for exhaustively mapping functional missense variants
J Weile, S Sun, AG Cote, J Knapp, M Verby, JC Mellor, Y Wu, C Pons, ...
Molecular systems biology 13 (12), 957, 2017
Pooled‐matrix protein interaction screens using Barcode Fusion Genetics
N Yachie, E Petsalaki, JC Mellor, J Weile, Y Jacob, M Verby, SB Ozturk, ...
Molecular systems biology 12 (4), 863, 2016
Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays
KN Lam, H van Bakel, AG Cote, A van der Ven, TR Hughes
Nucleic acids research 39 (11), 4680-4690, 2011
Rapid, stabilizing palindrome rearrangements in somatic cells by the center-break mechanism
LA Cunningham, AG Coté, C Cam-Ozdemir, SM Lewis
Molecular and cellular biology, 2003
Mus81-dependent double-strand DNA breaks at in vivo-generated cruciform structures in S. cerevisiae
AG Coté, SM Lewis
Molecular cell 31 (6), 800-812, 2008
A proactive genotype-to-patient-phenotype map for cystathionine beta-synthase
S Sun, J Weile, M Verby, Y Wu, Y Wang, AG Cote, I Fotiadou, ...
Genome medicine 12, 1-18, 2020
Palindromes and genomic stress fractures: bracing and repairing the damage
SM Lewis, AG Coté
DNA repair 5 (9-10), 1146-1160, 2006
Genomic organization and differential splicing of the mouse and human Pcyt2 genes
A Poloumienko, A Coté, AT Ten Quee, L Zhu, M Bakovic
Gene 325, 145-155, 2004
A proteome-scale map of the SARS-CoV-2–human contactome
DK Kim, B Weller, CW Lin, D Sheykhkarimli, JJ Knapp, G Dugied, ...
Nature biotechnology 41 (1), 140-149, 2023
Mapping DNA damage‐dependent genetic interactions in yeast via party mating and barcode fusion genetics
JJ Díaz‐Mejía, A Celaj, JC Mellor, A Coté, A Balint, B Ho, P Bansal, ...
Molecular Systems Biology 14 (5), e7985, 2018
A comprehensive map of human glucokinase variant activity
S Gersing, M Cagiada, M Gebbia, AP Gjesing, AG Coté, G Seesankar, ...
Genome Biology 24 (1), 97, 2023
Highly combinatorial genetic interaction analysis reveals a multi-drug transporter influence network
A Celaj, M Gebbia, L Musa, AG Cote, J Snider, V Wong, M Ko, T Fong, ...
Cell systems 10 (1), 25-38. e10, 2020
A web application and service for imputing and visualizing missense variant effect maps
Y Wu, J Weile, AG Cote, S Sun, J Knapp, M Verby, FP Roth
Bioinformatics 35 (17), 3191-3193, 2019
A map of binary SARS-CoV-2 protein interactions implicates host immune regulation and ubiquitination
DK Kim, B Weller, CW Lin, D Sheykhkarimli, J Knapp, N Kishore, M Sauer, ...
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