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Soohyung Park
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CHARMM‐GUI 10 years for biomolecular modeling and simulation
S Jo, X Cheng, J Lee, S Kim, SJ Park, DS Patel, AH Beaven, KI Lee, H Rui, ...
Journal of computational chemistry 38 (15), 1114-1124, 2017
2582017
Bilayer properties of lipid A from various Gram-negative bacteria
S Kim, DS Patel, S Park, J Slusky, JB Klauda, G Widmalm, W Im
Biophysical journal 111 (8), 1750-1760, 2016
1092016
CHARMM-GUI HMMM builder for membrane simulations with the highly mobile membrane-mimetic model
Y Qi, X Cheng, J Lee, JV Vermaas, TV Pogorelov, E Tajkhorshid, S Park, ...
Biophysical journal 109 (10), 2012-2022, 2015
982015
Distance-dependent proton transfer along water wires connecting acid− base pairs
MJ Cox, RLA Timmer, HJ Bakker, S Park, N Agmon
The Journal of Physical Chemistry A 113 (24), 6599-6606, 2009
812009
How Tolerant are Membrane Simulations with Mismatch in Area per Lipid between Leaflets?
S Park, AH Beaven, JB Klauda, W Im
Journal of Chemical Theory and Computation 11 (7), 3466–3477, 2015
762015
Transmembrane helix assembly by window exchange umbrella sampling
S Park, T Kim, W Im
Physical Review Letters 108 (10), 108102, 2012
752012
CHARMM-GUI polymer builder for modeling and simulation of synthetic polymers
YK Choi, SJ Park, S Park, S Kim, NR Kern, J Lee, W Im
Journal of chemical theory and computation 17 (4), 2431-2443, 2021
722021
Influence of ganglioside GM1 concentration on lipid clustering and membrane properties and curvature
DS Patel, S Park, EL Wu, MS Yeom, G Widmalm, JB Klauda, W Im
Biophysical journal 111 (9), 1987-1999, 2016
592016
Theory and simulation of diffusion-controlled Michaelis− Menten kinetics for a static enzyme in solution
S Park, N Agmon
The Journal of Physical Chemistry B 112 (19), 5977-5987, 2008
492008
Two Dimensional Window Exchange Umbrella Sampling for Transmembrane Helix Assembly
S Park, W Im
Journal of Chemical Theory and Computation 9 (1), 13-17, 2013
482013
A conserved αβ transmembrane interface forms the core of a compact T-cell receptor–CD3 structure within the membrane
L Krshnan, S Park, W Im, MJ Call, ME Call
Proceedings of the National Academy of Sciences 113 (43), E6649-E6658, 2016
462016
Transmembrane features governing Fc receptor CD16A assembly with CD16A signaling adaptor molecules
A Blázquez-Moreno, S Park, W Im, MJ Call, ME Call, HT Reyburn
Proceedings of the National Academy of Sciences 114 (28), E5645-E5654, 2017
422017
Comparative molecular dynamics simulation studies of realistic eukaryotic, prokaryotic, and archaeal membranes
ID Pogozheva, GA Armstrong, L Kong, TJ Hartnagel, CA Carpino, SE Gee, ...
Journal of chemical information and modeling 62 (4), 1036-1051, 2022
332022
Lipid-linked oligosaccharides in membranes sample conformations that facilitate binding to oligosaccharyltransferase
NR Kern, HS Lee, EL Wu, S Park, K Vanommeslaeghe, AD MacKerell, ...
Biophysical journal 107 (8), 1885-1895, 2014
282014
Transmembrane Complexes of DAP12 Crystallized in Lipid Membranes Provide Insights into Control of Oligomerization in Immunoreceptor Assembly
K Knoblich, S Park, M Lutfi, L van’t Hag, CE Conn, SA Seabrook, ...
Cell Reports 11 (8), 1184-1192, 2015
272015
Theory of Adaptive Optimization for Umbrella Sampling
S Park, W Im
Journal of Chemical Theory and Computation 10 (7), 2719-2728, 2014
272014
Atomistic simulations of dilute polyelectrolyte solutions
S Park, X Zhu, A Yethiraj
The Journal of Physical Chemistry B 116 (14), 4319-4327, 2012
262012
CHARMM-GUI membrane builder for lipid nanoparticles with ionizable cationic lipids and PEGylated lipids
S Park, YK Choi, S Kim, J Lee, W Im
Journal of chemical information and modeling 61 (10), 5192-5202, 2021
252021
Insight into early-stage unfolding of GPI-anchored human prion protein
EL Wu, Y Qi, S Park, SS Mallajosyula, AD MacKerell, JB Klauda, W Im
Biophysical journal 109 (10), 2090-2100, 2015
232015
Developing initial conditions for simulations of asymmetric membranes: a practical recommendation
S Park, W Im, RW Pastor
Biophysical Journal 120 (22), 5041-5059, 2021
202021
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Articles 1–20