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Tarmo Äijö
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High-definition spatial transcriptomics for in situ tissue profiling
S Vickovic, G Eraslan, F Salmén, J Klughammer, L Stenbeck, D Schapiro, ...
Nature methods 16 (10), 987-990, 2019
8042019
The Transcription Factor NFAT Promotes Exhaustion of Activated CD8+ T Cells
GJ Martinez, RM Pereira, T Äijö, EY Kim, F Marangoni, ME Pipkin, ...
Immunity 42 (2), 265-278, 2015
6752015
Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX
M Ko, J An, HS Bandukwala, L Chavez, T Äijö, WA Pastor, MF Segal, H Li, ...
Nature 497 (7447), 122-126, 2013
4352013
Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis
S Maniatis, T Äijö, S Vickovic, C Braine, K Kang, A Mollbrink, ...
Science 364 (6435), 89-93, 2019
3412019
Control of Foxp3 stability through modulation of TET activity
X Yue, S Trifari, T Äijö, A Tsagaratou, WA Pastor, JA Zepeda-Martínez, ...
Journal of Experimental Medicine 213 (3), 377-397, 2016
3032016
Dissecting the dynamic changes of 5-hydroxymethylcytosine in T-cell development and differentiation
A Tsagaratou, T Äijö, CWJ Lio, X Yue, Y Huang, SE Jacobsen, ...
Proceedings of the National Academy of Sciences 111 (32), E3306-E3315, 2014
1682014
Migratory DCs activate TGF-β to precondition naïve CD8+ T cells for tissue-resident memory fate
V Mani, SK Bromley, T Äijö, R Mora-Buch, E Carrizosa, RD Warner, ...
Science 366 (6462), 2019
1612019
Learning gene regulatory networks from gene expression measurements using non-parametric molecular kinetics
T Äijö, H Lähdesmäki
Bioinformatics 25 (22), 2937-2944, 2009
1222009
Genome-wide Analysis of STAT3-Mediated Transcription during Early Human Th17 Cell Differentiation
SK Tripathi, Z Chen, A Larjo, K Kanduri, K Nousiainen, T Äijo, ...
Cell Reports 19 (9), 1888-1901, 2017
1122017
Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images
P Ruusuvuori, T Äijö, S Chowdhury, C Garmendia-Torres, J Selinummi, ...
BMC bioinformatics 11 (1), 248, 2010
1102010
MicroRNA-directed program of cytotoxic CD8+ T-cell differentiation
S Trifari, ME Pipkin, HS Bandukwala, T Äijö, J Bassein, R Chen, ...
Proceedings of the National Academy of Sciences 110 (46), 18608-18613, 2013
1032013
Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation
T Äijö, V Butty, Z Chen, V Salo, S Tripathi, CB Burge, R Lahesmaa, ...
Bioinformatics 30 (12), i113-i120, 2014
842014
Identification of early gene expression changes during human Th17 cell differentiation
S Tuomela, V Salo, SK Tripathi, Z Chen, K Laurila, B Gupta, T Äijö, ...
Blood 119 (23), e151-e160, 2012
832012
The microRNA miR-31 inhibits CD8+ T cell function in chronic viral infection
HF Moffett, ANR Cartwright, HJ Kim, J Godec, J Pyrdol, T Äijö, GJ Martinez, ...
Nature Immunology 18 (7), 791-799, 2017
752017
Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing
T Äijö, CL Müller, R Bonneau
Bioinformatics 34 (3), 372-380, 2018
602018
Comparative analysis of human and mouse transcriptomes of Th17 cell priming.
S Tuomela, S Rautio, H Ahlfors, V Öling, V Salo, U Ullah, Z Chen, ...
Oncotarget 7 (12), 13416-13428, 2016
522016
An integrative computational systems biology approach identifies differentially regulated dynamic transcriptome signatures which drive the initiation of human T helper cell …
T Äijö, SM Edelman, T Lönnberg, A Larjo, H Kallionpää, S Tuomela, ...
BMC genomics 13 (1), 572, 2012
452012
Heterogeneous nuclear ribonucleoprotein L-like (hnRNPLL) and elongation factor, RNA polymerase II, 2 (ELL2) are regulators of mRNA processing in plasma cells
MJ Benson, T Äijö, X Chang, J Gagnon, UJ Pape, V Anantharaman, ...
Proceedings of the National Academy of Sciences 109 (40), 16252-16257, 2012
432012
Biophysically Motivated Regulatory Network Inference: Progress and Prospects
T Äijö, R Bonneau
Human heredity 81 (2), 62-77, 2016
30*2016
Tumor Tolerance–Promoting Function of Regulatory T Cells Is Optimized by CD28, but Strictly Dependent on Calcineurin
F Marangoni, R Zhang, V Mani, M Thelen, NJA Akbar, RD Warner, T Äijö, ...
The Journal of Immunology 200 (10), 3647-3661, 2018
192018
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