Peter F Stadler
Peter F Stadler
Professor of Bioinformatics, Univ. Leipzig
Verified email at bioinf.uni-leipzig.de - Homepage
Title
Cited by
Cited by
Year
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
nature 447 (7146), 799, 2007
51692007
Fast folding and comparison of RNA secondary structures
IL Hofacker, W Fontana, PF Stadler, LS Bonhoeffer, M Tacker, P Schuster
Monatshefte für Chemie/Chemical Monthly 125 (2), 167-188, 1994
25951994
ViennaRNA Package 2.0
R Lorenz, SH Bernhart, CH Zu Siederdissen, H Tafer, C Flamm, ...
Algorithms for molecular biology 6 (1), 26, 2011
23992011
RNA maps reveal new RNA classes and a possible function for pervasive transcription
P Kapranov, J Cheng, S Dike, DA Nix, R Duttagupta, AT Willingham, ...
Science 316 (5830), 1484-1488, 2007
22552007
MITOS: improved de novo metazoan mitochondrial genome annotation
M Bernt, A Donath, F Jühling, F Externbrink, C Florentz, G Fritzsch, J Pütz, ...
Molecular phylogenetics and evolution 69 (2), 313-319, 2013
17632013
The primary transcriptome of the major human pathogen Helicobacter pylori
CM Sharma, S Hoffmann, F Darfeuille, J Reignier, S Findeiß, A Sittka, ...
Nature 464 (7286), 250-255, 2010
10612010
Analyses of pig genomes provide insight into porcine demography and evolution
MAM Groenen, AL Archibald, H Uenishi, CK Tuggle, Y Takeuchi, ...
Nature 491 (7424), 393-398, 2012
10532012
From sequences to shapes and back: a case study in RNA secondary structures
P Schuster, W Fontana, PF Stadler, IL Hofacker
Proceedings of the Royal Society of London. Series B: Biological Sciences …, 1994
9471994
Fast and reliable prediction of noncoding RNAs
S Washietl, IL Hofacker, PF Stadler
Proceedings of the National Academy of Sciences 102 (7), 2454-2459, 2005
7792005
Secondary structure prediction for aligned RNA sequences
IL Hofacker, M Fekete, PF Stadler
Journal of molecular biology 319 (5), 1059-1066, 2002
7462002
Interleukin-6–dependent survival of multiple myeloma cells involves the Stat3-mediated induction of microRNA-21 through a highly conserved enhancer
D Löffler, K Brocke-Heidrich, G Pfeifer, C Stocsits, J Hackermüller, ...
Blood, The Journal of the American Society of Hematology 110 (4), 1330-1333, 2007
7132007
Smoothness within ruggedness: the role of neutrality in adaptation
MA Huynen, PF Stadler, W Fontana
Proceedings of the National Academy of Sciences 93 (1), 397-401, 1996
6771996
tRNAdb 2009: compilation of tRNA sequences and tRNA genes
F Jühling, M Mörl, RK Hartmann, M Sprinzl, PF Stadler, J Pütz
Nucleic acids research 37 (suppl_1), D159-D162, 2009
6762009
Proteinortho: detection of (co-) orthologs in large-scale analysis
M Lechner, S Findeiß, L Steiner, M Marz, PF Stadler, SJ Prohaska
BMC bioinformatics 12 (1), 1-9, 2011
6642011
Molecular evolution of a microRNA cluster
A Tanzer, PF Stadler
Journal of molecular biology 339 (2), 327-335, 2004
6642004
Comparative genomics reveals insights into avian genome evolution and adaptation
G Zhang, C Li, Q Li, B Li, DM Larkin, C Lee, JF Storz, A Antunes, ...
Science 346 (6215), 1311-1320, 2014
6332014
The African coelacanth genome provides insights into tetrapod evolution
CT Amemiya, J Alföldi, AP Lee, S Fan, H Philippe, I MacCallum, I Braasch, ...
Nature 496 (7445), 311-316, 2013
5342013
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
S Hoffmann, C Otto, S Kurtz, CM Sharma, P Khaitovich, J Vogel, ...
PLoS Comput Biol 5 (9), e1000502, 2009
4962009
RNAalifold: improved consensus structure prediction for RNA alignments
SH Bernhart, IL Hofacker, S Will, AR Gruber, PF Stadler
BMC bioinformatics 9 (1), 474, 2008
4962008
Bridging nonliving and living matter
S Rasmussen, L Chen, M Nilsson, S Abe
Artificial life 9 (3), 269-316, 2003
4942003
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