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Sara Ibrahim Omar
Sara Ibrahim Omar
Lead Computational Biology Scientist, Proteic Bioscience
Verified email at ualberta.ca
Title
Cited by
Cited by
Year
Modeling the structure of the frameshift-stimulatory pseudoknot in SARS-CoV-2 reveals multiple possible conformers
SI Omar, M Zhao, RV Sekar, S Arbabimoghadam, JA Tuszynski, ...
Biophysical Journal 120 (3), 313a-314a, 2021
502021
GLUT1 and TUBB4 in glioblastoma could be efficacious targets
MR Guda, CM Labak, SI Omar, S Asuthkar, S Airala, J Tuszynski, ...
Cancers 11 (9), 1308, 2019
332019
Insights into the Effect of the G245S Single Point Mutation on the Structure of p53 and the Binding of the Protein to DNA
MG Lepre, SI Omar, G Grasso, U Morbiducci, MA Deriu, JA Tuszynski
Molecules, 2017
272017
Activated carbon derived from sugarcane and modified with natural zeolite for efficient adsorption of methylene blue dye: Experimentally and theoretically approaches
F Mohamed, M Shaban, SK Zaki, MS Abd-Elsamie, R Sayed, M Zayed, ...
Scientific Reports 12 (1), 18031, 2022
252022
Mathematical and computational modeling in biology at multiple scales
JA Tuszynski, P Winter, D White, CY Tseng, KK Sahu, F Gentile, ...
Theoretical Biology and Medical Modelling 11, 1-42, 2014
182014
The molecular mechanism of action of methylene quinuclidinone and its effects on the structure of p53 mutants
SI Omar, J Tuszynski
Oncotarget 9 (98), 37137, 2018
132018
Virtual screening using covalent docking to find activators for G245S mutant p53
SI Omar, MG Lepre, U Morbiducci, MA Deriu, JA Tuszynski
PLoS One 13 (9), e0200769, 2018
122018
Ranking the binding energies of p53 mutant activators and their ADMET properties
SI Omar, J Tuszynski
Chemical Biology & Drug Design 86 (2), 163-172, 2015
82015
Molecular dynamics and related computational methods with applications to drug discovery
J Preto, F Gentile, P Winter, C Churchill, SI Omar, JA Tuszynski
Coupled Mathematical Models for Physical and Biological Nanoscale Systems …, 2018
72018
Protein design using physics informed neural networks
SI Omar, C Keasar, AJ Ben-Sasson, E Haber
Biomolecules 13 (3), 457, 2023
42023
A computational method for selecting short peptide sequences for inorganic material binding
N Nayebi, S Cetinel, SI Omar, JA Tuszynski, C Montemagno
Proteins: Structure, Function, and Bioinformatics 85 (11), 2024-2035, 2017
42017
Characterizing mutant protein activators using single molecule optical trapping
AL Ravindranath, A Alizadehkhaledi, A Khademi, SI Omar, J Tuszynski, ...
2018 IEEE 13th Nanotechnology Materials and Devices Conference (NMDC), 1-4, 2018
22018
Probability distributions of p53 mutations and their corresponding Shannon entropies in different cancer cell types
SA Moghadam, SI Omar, JA Tuszynski
International Symposium on Mathematical and Computational Biology, 37-77, 2021
12021
Molecular dynamics and related computational methods with applications to drug discovery
JA Tuszynski, T Luchko, P Winter, C Churchill, K Sahu, F Gentile, SI Omar, ...
Biomed. Sci. Today 3, e15, 2018
12018
Protein Structural Analysis of Calbindin D28k Function and Dysregulation: Potential Competition Between Ca2+ and Zn2+
S Ibrahim Omar, B C Albensi, K M Gough
Current Alzheimer Research 13 (7), 777-786, 2016
12016
Computational Modeling of Ca2+ and Zn 2+ Competition in Calbindin D28k, Implications for Altering Calcium Homeostasis
SI Omar
University of Manitoba (Canada), 2013
12013
Identification of p53-R175H Q167 and R248 as Residues Most Involved in Its Interaction with Plakoglobin
CS Lo, SI Omar, J Chang, B Bassey-Archibong, J A Tuszynski, N Jahroudi, ...
Re: GEN Open 3 (1), 40-51, 2023
2023
Modeling the structure of the frameshift stimulatory pseudoknot in SARS-CoV-2 reveals multiple possible conformers (preprint)
SI Omar, M Zhao, RV Sekar, SA Moghadam, JA Tuszynski, MT Woodside
2020
From Activation to Inhibition: p53 and PNKP as Targets for Cancer Therapy
SI Omar
2019
Cover Image, Volume 85, Issue 11
N Nayebi, S Cetinel, SI Omar, JA Tuszynski, C Montemagno
Proteins: Structure, Function, and Bioinformatics 85 (11), C1-C1, 2017
2017
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