Jean-Philippe Vert
Jean-Philippe Vert
Google Brain / Mines ParisTech
Verified email at mines-paristech.fr - Homepage
TitleCited byYear
Support vector machine applications in computational biology
B Schölkopf, K Tsuda, JP Vert
MIT press, 2004
1104*2004
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796, 2012
10472012
Group lasso with overlap and graph lasso
L Jacob, G Obozinski, JP Vert
Proceedings of the 26th annual international conference on machine learning …, 2009
8002009
Protein homology detection using string alignment kernels
H Saigo, JP Vert, N Ueda, T Akutsu
Bioinformatics 20 (11), 1682-1689, 2004
4332004
Clustered multi-task learning: A convex formulation
L Jacob, J Vert, FR Bach
Advances in neural information processing systems, 745-752, 2009
3682009
A community effort to assess and improve drug sensitivity prediction algorithms
Nature Biotechnology 32, 1202-1212, 2014
3392014
A path following algorithm for the graph matching problem
M Zaslavskiy, F Bach, JP Vert
IEEE Transactions on Pattern Analysis and Machine Intelligence 31 (12), 2227 …, 2008
3052008
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
N Servant, N Varoquaux, BR Lajoie, E Viara, CJ Chen, JP Vert, E Heard, ...
Genome biology 16 (1), 259, 2015
2772015
The influence of feature selection methods on accuracy, stability and interpretability of molecular signatures
AC Haury, P Gestraud, JP Vert
PloS one 6 (12), e28210, 2011
2762011
Classification of microarray data using gene networks
F Rapaport, A Zinovyev, M Dutreix, E Barillot, JP Vert
BMC bioinformatics 8 (1), 35, 2007
2752007
Protein network inference from multiple genomic data: a supervised approach
Y Yamanishi, JP Vert, M Kanehisa
Bioinformatics 20 (suppl_1), i363-i370, 2004
2682004
Protein-ligand interaction prediction: an improved chemogenomics approach
L Jacob, JP Vert
Bioinformatics 24 (19), 2149-2156, 2008
2662008
A primer on kernel methods
JP Vert, K Tsuda, B Schölkopf
Kernel methods in computational biology 47, 35-70, 2004
2542004
A new approach to collaborative filtering: Operator estimation with spectral regularization
J Abernethy, F Bach, T Evgeniou, JP Vert
Journal of Machine Learning Research 10 (Mar), 803-826, 2009
2522009
An accurate and interpretable model for siRNA efficacy prediction
JP Vert, N Foveau, C Lajaunie, Y Vandenbrouck
BMC bioinformatics 7 (1), 520, 2006
2382006
Graph kernels based on tree patterns for molecules
P Mahé, JP Vert
Machine learning 75 (1), 3-35, 2009
2332009
TIGRESS: trustful inference of gene regulation using stability selection
AC Haury, F Mordelet, P Vera-Licona, JP Vert
BMC systems biology 6 (1), 145, 2012
2202012
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization
V Boeva, A Zinovyev, K Bleakley, JP Vert, I Janoueix-Lerosey, O Delattre, ...
Bioinformatics 27 (2), 268-269, 2010
2192010
Graph kernels for molecular structure− activity relationship analysis with support vector machines
P Mahé, N Ueda, T Akutsu, JL Perret, JP Vert
Journal of chemical information and modeling 45 (4), 939-951, 2005
2062005
Extensions of marginalized graph kernels
P Mahé, N Ueda, T Akutsu, JL Perret, JP Vert
Proceedings of the twenty-first international conference on Machine learning, 70, 2004
1982004
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Articles 1–20