Mehmet Serkan Apaydın
Mehmet Serkan Apaydın
AI practitioner
Verified email at cs.stanford.edu - Homepage
Title
Cited by
Cited by
Year
Stochastic roadmap simulation: An efficient representation and algorithm for analyzing molecular motion
MS Apaydin, DL Brutlag, C Guestrin, D Hsu, JC Latombe, C Varma
Journal of Computational Biology 10 (3-4), 257-281, 2003
1752003
Capturing molecular energy landscapes with probabilistic conformational roadmaps
MS Apaydin, AP Singh, DL Brutlag, JC Latombe
Proceedings 2001 ICRA. IEEE International Conference on Robotics and …, 2001
622001
An optimal procedure for gap closing in whole genome shotgun sequencing
R Beigel, N Alon, S Kasif, MS Apaydin, L Fortnow
Proceedings of the fifth annual international conference on Computational …, 2001
472001
Structure-based protein NMR assignments using native structural ensembles
MS Apaydın, V Conitzer, BR Donald
Journal of Biomolecular NMR 40 (4), 263-276, 2008
362008
Using stochastic roadmap simulation to predict experimental quantities in protein folding kinetics: folding rates and phi-values
TH Chiang, MS Apaydin, DL Brutlag, D Hsu, JC Latombe
Journal of Computational Biology 14 (5), 578-593, 2007
322007
Stochastic roadmap simulation for the study of ligand-protein interactions
MS Apaydın, CE Guestrin, C Varma, DL Brutlag, JC Latombe
Bioinformatics 18 (suppl_2), S18-S26, 2002
322002
NVR-BIP: nuclear vector replacement using binary integer programming for NMR structure-based assignments
MS Apaydin, B Çatay, N Patrick, BR Donald
The Computer Journal 54 (5), 708-716, 2011
232011
A tabu search approach for the NMR protein structure-based assignment problem
G Çavuşlar, B Çatay, MS Apaydın
IEEE/ACM transactions on computational biology and bioinformatics 9 (6 …, 2012
222012
Stochastic conformational roadmaps for computing ensemble properties of molecular motion
MS Apaydın, DL Brutlag, C Guestrin, D Hsu, JC Latombe
Algorithmic Foundations of Robotics V, 131-147, 2004
202004
Predicting experimental quantities in protein folding kinetics using stochastic roadmap simulation
TH Chiang, MS Apaydin, DL Brutlag, D Hsu, JC Latombe
Annual International Conference on Research in Computational Molecular …, 2006
172006
A deep learning approach to sentiment analysis in Turkish
B Ciftci, MS Apaydin
2018 International Conference on Artificial Intelligence and Data Processing …, 2018
52018
An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem
J Aslanov, B Çatay, MS Apaydin
Proceedings of the 15th annual conference companion on Genetic and …, 2013
42013
PROGRESS IN NUCLEAR VECTOR REPLACEMENT FOR NMR PROTEIN STRUCTURE-BASED ASSIGNMENTS
S Cetinkaya, SN Ekren, MS Apaydin
RAIRO-OPERATIONS RESEARCH 50 (2), 341-349, 2016
22016
Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments
M Akhmedov, B Çatay, MS Apaydın
Journal of Bioinformatics and Computational Biology 13 (06), 1550020, 2015
22015
Distinguishing the type of NOE for NMR protein structure-based assignments
M Akhmedov, B Çatay, MS Apaydın
2013 21st Signal Processing and Communications Applications Conference (SIU …, 2013
12013
Using amino acid typing to improve the accuracy of NMR structure based assignments
H Erdoğan, MS Apaydin
2010 5th International Symposium on Health Informatics and Bioinformatics …, 2010
12010
A neural network approach for predicting speeds on road networks
UC Çakmak, B Çatay, MS Apaydin
2018 26th Signal Processing and Communications Applications Conference (SIU …, 2018
2018
Traffic speed prediction with neural networks
UC Çakmak, MS Apaydın, B Çatay
Operations Research Proceedings 2017, 737-743, 2018
2018
Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments
ŞN Ekren, MS Apaydın
2014 22nd Signal Processing and Communications Applications Conference (SIU …, 2014
2014
Developing a scoring function for NMR structure-based assignments using machine learning
MÇ Çalpur, H Erdoğan, B Catay, BR Donald, MS Apaydin
Computer and Information Sciences, 87-90, 2011
2011
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Articles 1–20