| Multiregional tumor trees are not phylogenies JM Alves, T Prieto, D Posada Trends in cancer 3 (8), 546-550, 2017 | 75 | 2017 |
| Rapid evolution and biogeographic spread in a colorectal cancer JM Alves, S Prado-Lopez, JM Cameselle-Teijeiro, D Posada Nature communications 10 (1), 5139, 2019 | 54 | 2019 |
| Stoichiometry of benthic invertebrate nutrient recycling: interspecific variation and the role of body mass JM Alves, A Caliman, RD Guariento, MP Figueiredo-Barros, LS Carneiro, ... Aquatic Ecology 44, 421-430, 2010 | 47 | 2010 |
| CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data A Kozlov, JM Alves, A Stamatakis, D Posada Genome biology 23 (1), 37, 2022 | 43 | 2022 |
| On the structural plasticity of the human genome: chromosomal inversions revisited J M Alves, A M Lopes, L Chikhi, A Amorim Current genomics 13 (8), 623-632, 2012 | 26 | 2012 |
| Sensitivity to sequencing depth in single-cell cancer genomics JM Alves, D Posada Genome medicine 10, 1-11, 2018 | 17 | 2018 |
| The 8p23 inversion polymorphism determines local recombination heterogeneity across human populations JM Alves, L Chikhi, A Amorim, AM Lopes Genome Biology and Evolution 6 (4), 921-930, 2014 | 16 | 2014 |
| Reassessing the evolutionary history of the 17q21 inversion polymorphism JM Alves, AC Lima, IA Pais, N Amir, R Celestino, G Piras, M Monne, ... Genome biology and evolution 7 (12), 3239-3248, 2015 | 15 | 2015 |
| Clonality and timing of relapsing colorectal cancer metastasis revealed through whole-genome single-cell sequencing JM Alves, S Prado-López, L Tomás, M Valecha, N Estévez-Gómez, ... Cancer letters 543, 215767, 2022 | 10 | 2022 |
| SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data S Kang, N Borgsmüller, M Valecha, J Kuipers, JM Alves, S Prado-López, ... Genome Biology 23 (1), 248, 2022 | 9 | 2022 |
| Comparative analysis of capture methods for genomic profiling of circulating tumor cells in colorectal cancer JM Alves, N Estévez-Gómez, M Valecha, S Prado-López, L Tomás, ... Genomics 114 (6), 110500, 2022 | 3 | 2022 |
| Single-cell mtDNA heteroplasmy in colorectal cancer J Almeida, A Pérez-Figueroa, JM Alves, M Valecha, S Prado-López, ... Genomics 114 (2), 110315, 2022 | 3 | 2022 |
| Biased evolutionary inferences from bulk tumor samples JM Alves, T Prieto, D Posada bioRxiv, 089680, 2016 | 1 | 2016 |
| NGS Analysis of Somatic Mutations in Cancer Genomes T Prieto, JM Alves, D Posada Big Data Analytics in Genomics, 357-372, 2016 | 1 | 2016 |
| Human Population Genomics/Macro Versus Microevolution JM Alves, AM Lopes Elsevier, 2017 | | 2017 |
| Population Genomics/Macro vs Microevolution JM Alves, AM Lopes Academic Press, 2013 | | 2013 |
