Debora Marks
Debora Marks
Systems Biology, Harvard Medical School, Broad Institute of Harvard and MIT
Verified email at - Homepage
Cited by
Cited by
Human microRNA targets
B John, AJ Enright, A Aravin, T Tuschl, C Sander, DS Marks
PLoS biology 2 (11), e363, 2004
MicroRNA targets in Drosophila
AJ Enright, B John, U Gaul, T Tuschl, C Sander, DS Marks
Genome biology 5 (1), 1-1, 2003
The microRNA. org resource: targets and expression
D Betel, M Wilson, A Gabow, DS Marks, C Sander
Nucleic acids research 36 (suppl_1), D149-D153, 2008
Identification of virus-encoded microRNAs
S Pfeffer, M Zavolan, FA Grässer, M Chien, JJ Russo, J Ju, B John, ...
Science 304 (5671), 734-736, 2004
Direct-coupling analysis of residue coevolution captures native contacts across many protein families
F Morcos, A Pagnani, B Lunt, A Bertolino, DS Marks, C Sander, ...
Proceedings of the National Academy of Sciences 108 (49), E1293-E1301, 2011
The small RNA profile during Drosophila melanogaster development
AA Aravin, M Lagos-Quintana, A Yalcin, M Zavolan, D Marks, B Snyder, ...
Developmental cell 5 (2), 337-350, 2003
Protein 3D structure computed from evolutionary sequence variation
DS Marks, LJ Colwell, R Sheridan, TA Hopf, A Pagnani, R Zecchina, ...
PloS one 6 (12), e28766, 2011
miR-122, a mammalian liver-specific microRNA, is processed from hcr mRNA and maydownregulate the high affinity cationic amino acid transporter CAT-1
J Chang, E Nicolas, D Marks, C Sander, A Lerro, MA Buendia, C Xu, ...
RNA biology 1 (2), 106-113, 2004
Protein structure prediction from sequence variation
DS Marks, TA Hopf, C Sander
Nature biotechnology 30 (11), 1072-1080, 2012
miRcode: a map of putative microRNA target sites in the long non-coding transcriptome
A Jeggari, DS Marks, E Larsson
Bioinformatics 28 (15), 2062-2063, 2012
Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs
AA Khan, D Betel, ML Miller, C Sander, CS Leslie, DS Marks
Nature biotechnology 27 (6), 549-555, 2009
Three-dimensional structures of membrane proteins from genomic sequencing
TA Hopf, LJ Colwell, R Sheridan, B Rost, C Sander, DS Marks
Cell 149 (7), 1607-1621, 2012
Mutation effects predicted from sequence co-variation
TA Hopf, JB Ingraham, FJ Poelwijk, CPI Schärfe, M Springer, C Sander, ...
Nature biotechnology 35 (2), 128-135, 2017
MicroRNA profiling of the murine hematopoietic system
S Monticelli, KM Ansel, C Xiao, ND Socci, AM Krichevsky, TH Thai, ...
Genome biology 6, 1-15, 2005
Sequence co-evolution gives 3D contacts and structures of protein complexes
TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ...
elife 3, e03430, 2014
Deep generative models of genetic variation capture the effects of mutations
AJ Riesselman, JB Ingraham, DS Marks
Nature methods 15 (10), 816-822, 2018
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
PY Chen, H Manninga, K Slanchev, M Chien, JJ Russo, J Ju, R Sheridan, ...
Genes & development 19 (11), 1288-1293, 2005
MicroRNA control of protein expression noise
JM Schmiedel, SL Klemm, Y Zheng, A Sahay, N Blüthgen, DS Marks, ...
Science 348 (6230), 128-132, 2015
Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development
D Leaman, PY Chen, J Fak, A Yalcin, M Pearce, U Unnerstall, DS Marks, ...
Cell 121 (7), 1097-1108, 2005
Target mRNA abundance dilutes microRNA and siRNA activity
A Arvey, E Larsson, C Sander, CS Leslie, DS Marks
Molecular systems biology 6 (1), 363, 2010
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