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Rainer Böckmann
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Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations
TA Wassenaar, HI Ingólfsson, RA Bockmann, DP Tieleman, SJ Marrink
Journal of chemical theory and computation 11 (5), 2144-2155, 2015
9482015
Effect of sodium chloride on a lipid bilayer
RA Böckmann, A Hac, T Heimburg, H Grubmüller
Biophysical journal 85 (3), 1647-1655, 2003
6652003
Going backward: a flexible geometric approach to reverse transformation from coarse grained to atomistic models
TA Wassenaar, K Pluhackova, RA Bockmann, SJ Marrink, DP Tieleman
Journal of chemical theory and computation 10 (2), 676-690, 2014
6452014
Optimization of the OPLS-AA force field for long hydrocarbons
SWI Siu, K Pluhackova, RA Böckmann
Journal of Chemical theory and Computation 8 (4), 1459-1470, 2012
5972012
Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations
RA Böckmann, BL De Groot, S Kakorin, E Neumann, H Grubmüller
Biophysical journal 95 (4), 1837-1850, 2008
3432008
Biomolecular simulations of membranes: physical properties from different force fields
SWI Siu, R Vácha, P Jungwirth, RA Böckmann
The Journal of chemical physics 128 (12), 2008
3282008
The multifaceted role of SNARE proteins in membrane fusion
J Han, K Pluhackova, RA Böckmann
Frontiers in physiology 8, 244875, 2017
3132017
Predicting free energy changes using structural ensembles
A Benedix, CM Becker, BL de Groot, A Caflisch, RA Böckmann
Nature methods 6 (1), 3-4, 2009
2702009
Multistep binding of divalent cations to phospholipid bilayers: a molecular dynamics study
RA Böckmann, H Grubmüller
Angewandte Chemie-International Edition 43 (8), 1021-1024, 2004
2412004
The closure of Pak1‐dependent macropinosomes requires the phosphorylation of CtBP1/BARS
P Liberali, E Kakkonen, G Turacchio, C Valente, A Spaar, G Perinetti, ...
The EMBO journal 27 (7), 970-981, 2008
2282008
Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase
RA Böckmann, H Grubmüller
Nature structural biology 9 (3), 198-202, 2002
2142002
Effects of alkali cations and halide anions on the DOPC lipid membrane
R Vácha, SWI Siu, M Petrov, RA Böckmann, J Barucha-Kraszewska, ...
The journal of physical chemistry A 113 (26), 7235-7243, 2009
1732009
A critical comparison of biomembrane force fields: structure and dynamics of model DMPC, POPC, and POPE bilayers
K Pluhackova, SA Kirsch, J Han, L Sun, Z Jiang, T Unruh, RA Böckmann
The Journal of Physical Chemistry B 120 (16), 3888-3903, 2016
1502016
Membrane-mediated oligomerization of G protein coupled receptors and its implications for GPCR function
S Gahbauer, RA Böckmann
Frontiers in physiology 7, 226635, 2016
1302016
High-throughput simulations of dimer and trimer assembly of membrane proteins. The DAFT approach
TA Wassenaar, K Pluhackova, A Moussatova, D Sengupta, SJ Marrink, ...
Journal of chemical theory and computation 11 (5), 2278-2291, 2015
1152015
Mechanism of interaction of monovalent ions with phosphatidylcholine lipid membranes
R Vácha, P Jurkiewicz, M Petrov, ML Berkowitz, RA Bockmann, ...
The Journal of Physical Chemistry B 114 (29), 9504-9509, 2010
1132010
Differential peptide dynamics is linked to major histocompatibility complex polymorphism
T Pöhlmann, RA Böckmann, H Grubmuller, B Uchanska-Ziegler, ...
Journal of Biological Chemistry 279 (27), 28197-28201, 2004
952004
Membrane pore formation in atomistic and coarse-grained simulations
SA Kirsch, RA Böckmann
Biochimica et Biophysica Acta (BBA)-Biomembranes 1858 (10), 2266-2277, 2016
932016
Biomembranes in atomistic and coarse-grained simulations
K Pluhackova, RA Böckmann
Journal of physics: condensed matter 27 (32), 323103, 2015
932015
Dynamic cholesterol-conditioned dimerization of the G protein coupled chemokine receptor type 4
K Pluhackova, S Gahbauer, F Kranz, TA Wassenaar, RA Böckmann
PLoS computational biology 12 (11), e1005169, 2016
842016
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