Bonnie Berger
Bonnie Berger
Verified email at mit.edu
TitleCited byYear
MultiCoil: a program for predicting two‐and three‐stranded coiled coils
E Wolf, PS Kim, B Berger
Protein Science 6 (6), 1179-1189, 1997
7961997
Identification of functional elements and regulatory circuits by Drosophila modENCODE
S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ...
Science 330 (6012), 1787-1797, 2010
7582010
Predicting coiled coils by use of pairwise residue correlations
B Berger, DB Wilson, E Wolf, T Tonchev, M Milla, PS Kim
Proceedings of the National Academy of Sciences 92 (18), 8259-8263, 1995
7441995
Ancient human genomes suggest three ancestral populations for present-day Europeans
I Lazaridis, N Patterson, A Mittnik, G Renaud, S Mallick, K Kirsanow, ...
Nature 513 (7518), 409, 2014
7422014
ARACHNE: a whole-genome shotgun assembler
S Batzoglou, DB Jaffe, K Stanley, J Butler, S Gnerre, E Mauceli, B Berger, ...
Genome research 12 (1), 177-189, 2002
6752002
Protein folding in the hydrophobic-hydrophilic (HP) model is NP-complete
B Berger, T Leighton
Journal of Computational Biology 5 (1), 27-40, 1998
5841998
Human and mouse gene structure: comparative analysis and application to exon prediction
S Batzoglou, L Pachter, JP Mesirov, B Berger, ES Lander
Genome research 10 (7), 950-958, 2000
4752000
Global alignment of multiple protein interaction networks with application to functional orthology detection
R Singh, J Xu, B Berger
Proceedings of the National Academy of Sciences 105 (35), 12763-12768, 2008
4742008
Efficient Bayesian mixed-model analysis increases association power in large cohorts
PR Loh, G Tucker, BK Bulik-Sullivan, BJ Vilhjalmsson, HK Finucane, ...
Nature genetics 47 (3), 284, 2015
4602015
Herpesviral protein networks and their interaction with the human proteome
P Uetz, YA Dong, C Zeretzke, C Atzler, A Baiker, B Berger, SV Rajagopala, ...
Science 311 (5758), 239-242, 2006
4342006
Paircoil2: improved prediction of coiled coils from sequence
AV McDonnell, T Jiang, AE Keating, B Berger
Bioinformatics 22 (3), 356-358, 2005
3592005
IsoRankN: spectral methods for global alignment of multiple protein networks
CS Liao, K Lu, M Baym, R Singh, B Berger
Bioinformatics 25 (12), i253-i258, 2009
3492009
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202, 2014
3392014
Pairwise global alignment of protein interaction networks by matching neighborhood topology
R Singh, J Xu, B Berger
Annual International Conference on Research in Computational Molecular …, 2007
2992007
Inferring admixture histories of human populations using linkage disequilibrium
PR Loh, M Lipson, N Patterson, P Moorjani, JK Pickrell, D Reich, B Berger
Genetics 193 (4), 1233-1254, 2013
2442013
Computational solutions for omics data
B Berger, J Peng, M Singh
Nature reviews genetics 14 (5), 333, 2013
2432013
Widespread macromolecular interaction perturbations in human genetic disorders
N Sahni, S Yi, M Taipale, JIF Bass, J Coulombe-Huntington, F Yang, ...
Cell 161 (3), 647-660, 2015
2412015
An integrative approach to ortholog prediction for disease-focused and other functional studies
Y Hu, I Flockhart, A Vinayagam, C Bergwitz, B Berger, N Perrimon, ...
BMC bioinformatics 12 (1), 357, 2011
2302011
Matt: local flexibility aids protein multiple structure alignment
M Menke, B Berger, L Cowen
PLoS computational biology 4 (1), e10, 2008
2082008
Local rule-based theory of virus shell assembly
B Berger, PW Shor, L Tucker-Kellogg, J King
Proceedings of the National Academy of Sciences 91 (16), 7732-7736, 1994
2031994
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