|The sequence and de novo assembly of the giant panda genome|
R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ...
Nature 463 (7279), 311, 2010
|A compendium of RNA-binding motifs for decoding gene regulation|
D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ...
Nature 499 (7457), 172, 2013
|Determination and inference of eukaryotic transcription factor sequence specificity|
MT Weirauch, A Yang, M Albu, AG Cote, A Montenegro-Montero, P Drewe, ...
Cell 158 (6), 1431-1443, 2014
|RBPDB: a database of RNA-binding specificities|
KB Cook, H Kazan, K Zuberi, Q Morris, TR Hughes
Nucleic acids research 39 (suppl_1), D301-D308, 2010
|High-throughput characterization of protein–RNA interactions|
KB Cook, TR Hughes, QD Morris
Briefings in functional genomics 14 (1), 74-89, 2014
|Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition|
JD Laver, X Li, D Ray, KB Cook, NA Hahn, S Nabeel-Shah, M Kekis, ...
Genome biology 16 (1), 94, 2015
|The crystal structure of the NHL domain in complex with RNA reveals the molecular basis of Drosophila brain-tumor-mediated gene regulation|
I Loedige, L Jakob, T Treiber, D Ray, M Stotz, N Treiber, J Hennig, ...
Cell reports 13 (6), 1206-1220, 2015
|The dynamic three-dimensional organization of the diploid yeast genome|
S Kim, I Liachko, DG Brickner, K Cook, WS Noble, JH Brickner, ...
Elife 6, e23623, 2017
|RNAcompete-S: Combined RNA sequence/structure preferences for RNA binding proteins derived from a single-step in vitro selection|
KB Cook, S Vembu, KCH Ha, H Zheng, KU Laverty, TR Hughes, D Ray, ...
Methods 126, 18-28, 2017
|Paralogs hnRNP L and hnRNP LL exhibit overlapping but distinct RNA binding constraints|
SA Smith, D Ray, KB Cook, MJ Mallory, TR Hughes, KW Lynch
PloS one 8 (11), e80701, 2013
|Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages|
EM Bunnik, KB Cook, N Varoquaux, G Batugedara, J Prudhomme, A Cort, ...
Nature communications 9 (1), 1910, 2018
|Retrieval of aerosol physical and chemical properties from mid-infrared extinction spectra|
AY Zasetsky, ME Earle, B Cosic, R Schiwon, IA Grishin, R McPhail, ...
Journal of Quantitative Spectroscopy and Radiative Transfer 107 (2), 294-305, 2007
|Predicting gene expression in the human malaria parasite Plasmodium falciparum|
DF Read, K Cook, YY Lu, K Le Roch, W Noble
bioRxiv, 431049, 2019
|Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features|
DF Read, K Cook, YY Lu, KG Le Roch, WS Noble
PLoS computational biology 15 (9), e1007329, 2019
|Measuring significant changes in chromatin conformation with ACCOST|
KB Cook, KG Le Roch, JP Vert, W Noble
BioRxiv, 727768, 2019
K Cook, H Kazan, K Zuberi, Q Morris, T Hughes
Nucleic Acids Research 39 (suppl_1), 2011