| Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming G Schiebinger, J Shu, M Tabaka, B Cleary, V Subramanian, A Solomon, ... Cell 176 (4), 928-943. e22, 2019 | 676 | 2019 |
| The alternating descent conditional gradient method for sparse inverse problems N Boyd, G Schiebinger, B Recht SIAM Journal on Optimization 27 (2), 616-639, 2017 | 210 | 2017 |
| A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants R Shahan, CW Hsu, TM Nolan, BJ Cole, IW Taylor, L Greenstreet, ... Developmental cell 57 (4), 543-560. e9, 2022 | 141 | 2022 |
| Superresolution without separation G Schiebinger, E Robeva, B Recht Information and Inference: A Journal of the IMA 7 (1), 1-30, 2018 | 89 | 2018 |
| The geometry of kernelized spectral clustering G Schiebinger, MJ Wainwright, B Yu | 77 | 2015 |
| Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming G Schiebinger, J Shu, M Tabaka, B Cleary, V Subramanian, A Solomon, ... BioRxiv, 191056, 2017 | 73 | 2017 |
| Statistical optimal transport via factored couplings A Forrow, JC Hütter, M Nitzan, P Rigollet, G Schiebinger, J Weed The 22nd International Conference on Artificial Intelligence and Statistics …, 2019 | 72 | 2019 |
| Transcriptional instability is not a universal attribute of aging LA Warren, DJ Rossi, GR Schiebinger, IL Weissman, SK Kim, SR Quake Aging cell 6 (6), 775-782, 2007 | 61 | 2007 |
| Sharp Inequalities for -Divergences A Guntuboyina, S Saha, G Schiebinger IEEE transactions on information theory 60 (1), 104-121, 2013 | 49 | 2013 |
| LineageOT is a unified framework for lineage tracing and trajectory inference A Forrow, G Schiebinger Nature communications 12 (1), 4940, 2021 | 45* | 2021 |
| Developmental single-cell transcriptomics in the Lytechinus variegatus sea urchin embryo AJ Massri, L Greenstreet, A Afanassiev, A Berrio, GA Wray, G Schiebinger, ... Development 148 (19), dev198614, 2021 | 39 | 2021 |
| Towards a mathematical theory of trajectory inference H Lavenant, S Zhang, YH Kim, G Schiebinger arXiv preprint arXiv:2102.09204, 2021 | 33 | 2021 |
| Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root TM Nolan, N Vukašinović, CW Hsu, J Zhang, I Vanhoutte, R Shahan, ... Science 379 (6639), eadf4721, 2023 | 32 | 2023 |
| Optimal transport analysis reveals trajectories in steady-state systems S Zhang, A Afanassiev, L Greenstreet, T Matsumoto, G Schiebinger PLoS computational biology 17 (12), e1009466, 2021 | 22 | 2021 |
| Trajectory inference via mean-field langevin in path space L Chizat, S Zhang, M Heitz, G Schiebinger Advances in Neural Information Processing Systems 35, 16731-16742, 2022 | 16 | 2022 |
| Reconstructing developmental landscapes and trajectories from single-cell data G Schiebinger Current Opinion in Systems Biology 27, 100351, 2021 | 12 | 2021 |
| Wasserstein mirror gradient flow as the limit of the Sinkhorn algorithm N Deb, YH Kim, S Pal, G Schiebinger arXiv preprint arXiv:2307.16421, 2023 | 6 | 2023 |
| Reconstructing probabilistic trees of cellular differentiation from single-cell RNA-seq data M Shiffman, WT Stephenson, G Schiebinger, J Huggins, T Campbell, ... arXiv preprint arXiv:1811.11790, 2018 | 6 | 2018 |
| Methodologies for following EMT in vivo at single cell resolution AJ Massri, GR Schiebinger, A Berrio, L Wang, GA Wray, DR McClay The Epithelial-to Mesenchymal Transition: Methods and Protocols, 303-314, 2021 | 5 | 2021 |
| Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming. bioRxiv, 191056 G Schiebinger, J Shu, M Tabaka, B Cleary, V Subramanian, A Solomon, ... | 5 | 2017 |
