Yong Zhang 张勇
Yong Zhang 张勇
Professor of Bioinformatics, Tongji University
Verified email at tongji.edu.cn - Homepage
Title
Cited by
Cited by
Year
Model-based analysis of ChIP-Seq (MACS)
Y Zhang, T Liu, CA Meyer, J Eeckhoute, DS Johnson, BE Bernstein, ...
Genome Biol 9 (9), R137, 2008
80572008
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
M Lupien, J Eeckhoute, CA Meyer, Q Wang, Y Zhang, W Li, JS Carroll, ...
Cell 132 (6), 958-970, 2008
8912008
Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer
Q Wang, W Li, Y Zhang, X Yuan, K Xu, J Yu, Z Chen, R Beroukhim, ...
Cell 138 (2), 245-256, 2009
8512009
Identifying ChIP-seq enrichment using MACS
J Feng, T Liu, B Qin, Y Zhang, XS Liu
Nature Protocols 7 (9), 1728-1740, 2012
7762012
PPARγ and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale
MI Lefterova, Y Zhang, DJ Steger, M Schupp, J Schug, A Cristancho, ...
Genes & development 22 (21), 2941, 2008
6602008
Cistrome: an integrative platform for transcriptional regulation studies
T Liu, JA Ortiz, L Taing, CA Meyer, B Lee, Y Zhang, H Shin, SS Wong, ...
Genome Biology 12 (8), R83, 2011
5122011
Nucleosome dynamics define transcriptional enhancers
HH He, CA Meyer, H Shin, ST Bailey, G Wei, Q Wang, Y Zhang, K Xu, ...
Nature genetics 42 (4), 343-347, 2010
4742010
Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer
Z Du, T Fei, RGW Verhaak, Z Su, Y Zhang, M Brown, Y Chen, XS Liu
Nature structural & molecular biology 20 (7), 908-913, 2013
4242013
Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
Y Zhang, Z Moqtaderi, BP Rattner, G Euskirchen, M Snyder, JT Kadonaga, ...
Nature structural & molecular biology 16 (8), 847-852, 2009
4022009
Chromatin signature of embryonic pluripotency is established during genome activation
NL Vastenhouw, Y Zhang, IG Woods, F Imam, A Regev, XS Liu, J Rinn, ...
Nature 464 (7290), 922-926, 2010
3272010
A transcriptional signature and common gene networks link cancer with lipid metabolism and diverse human diseases
HA Hirsch, D Iliopoulos, A Joshi, Y Zhang, SA Jaeger, M Bulyk, ...
Cancer Cell 17 (4), 348-361, 2010
2992010
NONCODE: an integrated knowledge database of non-coding RNAs
C Liu, B Bai, G SkogerbÝ, L Cai, W Deng, Y Zhang, D Bu, Y Zhao, R Chen
Nucleic acids research 33 (suppl_1), D112-D115, 2005
2902005
GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data
J Feng, CA Meyer, Q Wang, JS Liu, XS Liu, Y Zhang
Bioinformatics, 2012
2852012
Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos
X Liu, C Wang, W Liu, J Li, C Li, X Kou, J Chen, Y Zhao, H Gao, H Wang, ...
Nature 537 (7621), 558-562, 2016
2612016
Target analysis by integration of transcriptome and ChIP-seq data with BETA
S Wang, H Sun, J Ma, C Zang, C Wang, J Wang, Q Tang, CA Meyer, ...
Nature protocols 8 (12), 2502-2515, 2013
2102013
Using MACS to Identify Peaks from ChIP‐Seq Data
J Feng, T Liu, Y Zhang
Current Protocols in Bioinformatics 2, 1-2.14, 2011
2042011
Systematic evaluation of factors influencing ChIP-seq fidelity
Y Chen, N Negre, Q Li, JO Mieczkowska, M Slattery, T Liu, Y Zhang, ...
Nature methods 9 (6), 609-614, 2012
1562012
Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq
Y Zhang, H Shin, JS Song, Y Lei, XS Liu
BMC genomics 9 (1), 537, 2008
1422008
A Comprehensive View of Nuclear Receptor Cancer Cistromes
Q Tang, Y Chen, C Meyer, T Geistlinger, M Lupien, Q Wang, T Liu, ...
Cancer Research, 2011
1162011
Identification of key factors conquering developmental arrest of somatic cell cloned embryos by combining embryo biopsy and single-cell sequencing
W Liu, X Liu, C Wang, Y Gao, R Gao, X Kou, Y Zhao, J Li, Y Wu, W Xiu, ...
Cell discovery 2, 16010, 2016
912016
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