| CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database BP Alcock, AR Raphenya, TTY Lau, KK Tsang, M Bouchard, ... Nucleic acids research 48 (D1), D517-D525, 2020 | 2166 | 2020 |
| Molecular Diversity and Distribution of Marine Fungi Across 130 European Environmental Samples TA Richards, G Leonard, F Mahé, J Del Campo, S Romac, MDM Jones, ... Proceedings of the Royal Society B: Biological Sciences 282 (1819), 20152243, 2015 | 171 | 2015 |
| CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database BP Alcock, W Huynh, R Chalil, KW Smith, AR Raphenya, MA Wlodarski, ... Nucleic acids research 51 (D1), D690-D699, 2023 | 155 | 2023 |
| Divergent SARS-CoV-2 variant emerges in white-tailed deer with deer-to-human transmission B Pickering*, O Lung*, F Maguire*, P Kruczkiewicz, JD Kotwa, ... Nature Microbiology, 1-14, 2022 | 128* | 2022 |
| Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic Islands F Maguire*, B Jia*, K Gray, WYV Lau, RG Beiko, FSL Brinkman Microbial Genomics 6 (10), 2020 | 97 | 2020 |
| A comparison of whole genome sequencing of SARS-CoV-2 using amplicon-based sequencing, random hexamers, and bait capture J Nasir, R Kozak, P Aftanas, A Raphenya, K Smith, F Maguire, H Maan, ... Viruses, 2020 | 84 | 2020 |
| The black pill: new technology and the male supremacy of involuntarily celibate men K Preston, M Halpin, F Maguire Men and masculinities 24 (5), 823-841, 2022 | 76 | 2022 |
| Cryptic infection of a broad taxonomic and geographic diversity of tadpoles by Perkinsea protists A Chambouvet, DJ Gower, M Jirků, MJ Yabsley, AK Davis, G Leonard, ... Proceedings of the National Academy of Sciences 112 (34), E4743-E4751, 2015 | 71 | 2015 |
| Environment-dependent fitness gains can be driven by horizontal gene transfer of transporter-encoding genes DS Milner, V Attah, E Cook, F Maguire, FR Savory, M Morrison, CA Müller, ... Proceedings of the National Academy of Sciences 116 (12), 5613-5622, 2019 | 45 | 2019 |
| Diverse Molecular Signatures for Ribosomally 'Active' Perkinsea in Marine Sediments A Chambouvet, C Berney, S Romac, S Audic, F Maguire, C De Vargas, ... BMC Microbiology 14 (1), 110, 2014 | 43 | 2014 |
| Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists JG Wideman, A Monier, R Rodríguez-Martínez, G Leonard, E Cook, ... Nature Microbiology 5 (1), 154-165, 2020 | 38 | 2020 |
| The integrated rapid infectious disease analysis (IRIDA) platform TC Matthews, FR Bristow, EJ Griffiths, A Petkau, J Adam, D Dooley, ... BioRxiv, 381830, 2018 | 34 | 2018 |
| Comparative genomic analysis of the ‘pseudofungus’ Hyphochytrium catenoides G Leonard, A Labarre, DS Milner, A Monier, D Soanes, JG Wideman, ... Open biology 8 (1), 170184, 2018 | 33 | 2018 |
| Machine learning for antimicrobial resistance prediction: current practice, limitations, and clinical perspective JI Kim, F Maguire, KK Tsang, T Gouliouris, SJ Peacock, TA McAllister, ... Clinical microbiology reviews 35 (3), e00179-21, 2022 | 29 | 2022 |
| Organelle Evolution: A Mosaic of ‘Mitochondrial’ Functions F Maguire, TA Richards Current Biology 24 (11), R518-R520, 2014 | 29 | 2014 |
| Genomic and transcriptomic characterization of Delta SARS-CoV-2 infection in free-ranging white-tailed deer (Odocoileus virginianus) JD Kotwa, B Lobb, A Massé, M Gagnier, P Aftanas, A Banerjee, A Banete, ... Iscience 26 (11), 2023 | 27* | 2023 |
| Intracellular infection of diverse diatoms by an evolutionary distinct relative of the fungi A Chambouvet, A Monier, F Maguire, S Itoïz, J Del Campo, P Elies, ... Current Biology 29 (23), 4093-4101. e4, 2019 | 25 | 2019 |
| Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package EJ Griffiths, RE Timme, CI Mendes, AJ Page, NF Alikhan, D Fornika, ... Gigascience 11, giac003, 2022 | 24* | 2022 |
| Identification of primary antimicrobial resistance drivers in agricultural nontyphoidal Salmonella enterica serovars by using machine learning F Maguire, MA Rehman, C Carrillo, MS Diarra, RG Beiko Msystems 4 (4), 10.1128/msystems. 00211-19, 2019 | 21 | 2019 |
| Ten quick tips for deep learning in biology BD Lee, A Gitter, CS Greene, S Raschka, F Maguire, AJ Titus, MD Kessler, ... PLoS computational biology 18 (3), e1009803, 2022 | 17 | 2022 |
Thomas RichardsDepartment of Zoology, University of OxfordVerified email at zoo.ox.ac.uk
