Xiaowen Liu
Xiaowen Liu
School of Informatics and Computing, IUPUI
Verified email at iupui.edu - Homepage
TitleCited byYear
Computing the maximum similarity bi-clusters of gene expression data
X Liu, L Wang
Bioinformatics 23 (1), 50-56, 2007
1702007
Deconvolution and Database Search of Complex Tandem Mass Spectra of Intact Proteins A COMBINATORIAL APPROACH
X Liu, Y Inbar, PC Dorrestein, C Wynne, N Edwards, P Souda, ...
Molecular & Cellular Proteomics 9 (12), 2772-2782, 2010
1322010
Protein identification using top-down spectra
X Liu, Y Sirotkin, Y Shen, G Anderson, YS Tsai, YS Ting, DR Goodlett, ...
Molecular & Cellular Proteomics 11 (6), 2012
1232012
Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions
C Ansong, S Wu, D Meng, X Liu, HM Brewer, BLD Kaiser, ES Nakayasu, ...
Proceedings of the National Academy of Sciences 110 (25), 10153-10158, 2013
1152013
Top-down proteomics reveals concerted reductions in myofilament and Z-disc protein phosphorylation after acute myocardial infarction
Y Peng, ZR Gregorich, SG Valeja, H Zhang, W Cai, YC Chen, H Guner, ...
Molecular & Cellular Proteomics 13 (10), 2752-2764, 2014
752014
MASH Suite Pro: a comprehensive software tool for top-down proteomics
W Cai, H Guner, ZR Gregorich, AJ Chen, S Ayaz-Guner, Y Peng, ...
Molecular & Cellular Proteomics 15 (2), 703-714, 2016
702016
Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery
A Ibrahim, L Yang, C Johnston, X Liu, B Ma, NA Magarvey
Proceedings of the National Academy of Sciences 109 (47), 19196-19201, 2012
612012
TopPIC: A software tool for top-down mass spectrometry-based proteoform identification and characterization
Q Kou, L Xun, X Liu
Bioinformatics 32 (22), 3495-3497, 2016
562016
An O (n2) algorithm for signed translocation
L Wang, D Zhu, X Liu, S Ma
Journal of Computer and System Sciences 70 (3), 284-299, 2005
452005
De novo protein sequencing by combining top-down and bottom-up tandem mass spectra
X Liu, LJM Dekker, S Wu, M VanDuijn, TM Luider, N Tolić, Q Kou, ...
Journal of proteome research 13 (7), 3241–3248, 2014
422014
Automated protein (re) sequencing with MS/MS and a homologous database yields almost full coverage and accuracy
X Liu, Y Han, D Yuen, B Ma
Bioinformatics 25 (17), 2174-2180, 2009
382009
Quantitative analysis of human salivary gland‐derived intact proteome using top‐down mass spectrometry
S Wu, JN Brown, N Tolić, D Meng, X Liu, H Zhang, R Zhao, RJ Moore, ...
Proteomics 14 (10), 1211-1222, 2014
372014
Single-shot top-down proteomics with capillary zone electrophoresis-electrospray ionization-tandem mass spectrometry for identification of nearly 600 Escherichia coli proteoforms
RA Lubeckyj, EN McCool, X Shen, Q Kou, X Liu, L Sun
Analytical chemistry 89 (22), 12059-12067, 2017
332017
Identification of ultramodified proteins using top-down tandem mass spectra
X Liu, S Hengel, S Wu, N Tolić, L Pasa-Tolic, PA Pevzner
Journal of proteome research 12 (12), 5830-5838, 2013
322013
Improving protein order-disorder classification using charge-hydropathy plots
F Huang, CJ Oldfield, B Xue, WL Hsu, J Meng, X Liu, L Shen, P Romero, ...
BMC bioinformatics 15 (Suppl 17), S4, 2014
302014
Better score function for peptide identification with ETD MS/MS spectra
X Liu, B Shan, L Xin, B Ma
BMC bioinformatics 11 (Suppl 1), S4, 2010
282010
Modeling protein interacting groups by quasi-bicliques: complexity, algorithm, and application
X Liu, J Li, L Wang
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 7 …, 2010
262010
Deep Top-Down Proteomics Using Capillary Zone Electrophoresis-Tandem Mass Spectrometry: Identification of 5700 Proteoforms from the Escherichia coli Proteome
EN McCool, RA Lubeckyj, X Shen, D Chen, Q Kou, X Liu, L Sun
Analytical chemistry 90 (9), 5529-5533, 2018
252018
De novo sequencing of peptides from top-down tandem mass spectra
K Vyatkina, S Wu, LJM Dekker, MM VanDuijn, X Liu, N Tolić, M Dvorkin, ...
Journal of proteome research 14 (11), 4450-4462, 2015
242015
Top-down analysis of immunoglobulin G isotypes 1 and 2 with electron transfer dissociation on a high-field Orbitrap mass spectrometer
L Fornelli, D Ayoub, K Aizikov, X Liu, E Damoc, PA Pevzner, A Makarov, ...
Journal of Proteomics 159, 67-76, 2017
202017
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