| Analysis and modeling of multivariate chaotic time series based on neural network M Han, Y Wang Expert Systems with Applications 36 (2), 1280-1290, 2009 | 101 | 2009 |
| Aptamer drug conjugates (ApDCs) of active metabolites of nucleoside analogues and cytotoxic agents inhibit pancreatic tumor cell growth JJR Sorah Yoon, Kai-Wen Huang, Vikash Reebye, Duncan Spalding, Teresa M ... Molecular Therapy: Nucleic Acid, 2016 | 78* | 2016 |
| AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX Experiments TMP Phuong Dao4 , Jan Hoinka4 , Mayumi Takahashi , Jiehua Zhou , Michelle Ho ... Cell System 3, 62–70, 2016 | 74 | 2016 |
| Functional module identification in protein interaction networks by interaction patterns Y Wang, X Qian Bioinformatics 30 (1), 81-93, 2014 | 55 | 2014 |
| Defining and identifying cograph communities in complex networks S Jia, LGY Gao, J Nastos, Y Wang New J. Phys 17, 013044, 2015 | 44 | 2015 |
| Reprogramming of regulatory network using expression uncovers sex-specific gene regulation in Drosophila Y Wang, DY Cho, H Lee, J Fear, B Oliver, TM Przytycka Nature communications 9 (1), 4061, 2018 | 32 | 2018 |
| Diagnostic Evidence GAuge of Single cells (DEGAS): a flexible deep transfer learning framework for prioritizing cells in relation to disease TS Johnson, CY Yu, Z Huang, S Xu, T Wang, C Dong, W Shao, MA Zaid, ... Genome medicine 14 (1), 11, 2022 | 18 | 2022 |
| ParsVNN: parsimony visible neural networks for uncovering cancer-specific and drug-sensitive genes and pathways X Huang, K Huang, T Johnson, M Radovich, J Zhang, J Ma, Y Wang NAR genomics and bioinformatics 3 (4), lqab097, 2021 | 15 | 2021 |
| Subpopulation detection and their comparative analysis across single-cell experiments with scPopCorn Y Wang, J Hoinka, TM Przytycka Cell systems 8 (6), 506-513. e5, 2019 | 15 | 2019 |
| Joint clustering of protein interaction networks through Markov random walk Y Wang, X Qian BMC Systems Biology 8 (Suppl 1), S9, 2014 | 15 | 2014 |
| AptaBlocks: Designing RNA complexes and accelerating RNA-based drug delivery systems Y Wang, J Hoinka, Y Liang, T Adamus, P Swiderski, TM Przytycka Nucleic acids research 46 (16), 8133-8142, 2018 | 12 | 2018 |
| Finding low-conductance sets with dense interactions (FLCD) for better protein complex prediction Y Wang, X Qian Proceedings of the 7th ACM International Conference on Bioinformatics …, 2016 | 12 | 2016 |
| Fast projection onto the capped simplex with applications to sparse regression in bioinformatics MS Ang, J Ma, N Liu, K Huang, Y Wang Advances in Neural Information Processing Systems 34, 9990-9999, 2021 | 9 | 2021 |
| A novel subgradient-based optimization algorithm for blockmodel functional module identification Y Wang, X Qian BMC Bioinformatics 14 (Suppl 2), S23, 2013 | 8 | 2013 |
| Functional module identification by block modeling using simulated annealing with path relinking YWX Qian Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012 | 7 | 2012 |
| Co-segmentation of multiple images through random walk on graphs Y Wang, BJ Yoon, X Qian 2016 IEEE International Conference on Acoustics, Speech and Signal …, 2016 | 6 | 2016 |
| Biological network clustering by robust NMF Y Wang, X Qian Proceedings of the 5th ACM Conference on Bioinformatics, Computational …, 2014 | 5 | 2014 |
| NetREX-CF integrates incomplete transcription factor data with gene expression to reconstruct gene regulatory networks Y Wang, H Lee, JM Fear, I Berger, B Oliver, TM Przytycka Communications Biology 5 (1), 1282, 2022 | 4 | 2022 |
| MobilePrune: Neural Network Compression via ℓ0 Sparse Group Lasso on the Mobile System Y Shao, K Zhao, Z Cao, Z Peng, X Peng, P Li, Y Wang, J Ma Sensors 22 (11), 4081, 2022 | 4 | 2022 |
| ClusterM: a scalable algorithm for computational prediction of conserved protein complexes across multiple protein interaction networks Y Wang, H Jeong, BJ Yoon, X Qian BMC genomics 21, 1-14, 2020 | 4 | 2020 |
