| ANGES: reconstructing ANcestral GEnomeS maps BR Jones, A Rajaraman, E Tannier, C Chauve Bioinformatics 28 (18), 2388-2390, 2012 | 68 | 2012 |
| Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, ... Molecular biology and evolution 37 (2), 599-603, 2020 | 38 | 2020 |
| Phylogenetic approach to recover integration dates of latent HIV sequences within-host BR Jones, NN Kinloch, J Horacsek, B Ganase, M Harris, PR Harrigan, ... Proceedings of the National Academy of Sciences 115 (38), E8958-E8967, 2018 | 21 | 2018 |
| HIV diversity and genetic compartmentalization in blood and testes during suppressive antiretroviral therapy RL Miller, R Ponte, BR Jones, NN Kinloch, FH Omondi, MA Jenabian, ... Journal of virology 93 (17), 2019 | 9 | 2019 |
| node.dating: dating ancestors in phylogenetic trees in R BR Jones, AFY Poon Bioinformatics 33 (6), 932-934, 2017 | 8 | 2017 |
| Tree shape‐based approaches for the comparative study of cophylogeny M Avino, GT Ng, Y He, MS Renaud, BR Jones, AFY Poon Ecology and evolution 9 (12), 6756-6771, 2019 | 6 | 2019 |
| HIV-1 variants are archived throughout infection and persist in the reservoir K Brooks, BR Jones, DA Dilernia, DJ Wilkins, DT Claiborne, S McInally, ... PLoS pathogens 16 (6), e1008378, 2020 | 5 | 2020 |
| Longitudinal within-host evolution of HIV Nef-mediated CD4, HLA and SERINC5 downregulation activity: a case study H Sudderuddin, NN Kinloch, SW Jin, RL Miller, BR Jones, CJ Brumme, ... Retrovirology 17 (1), 3, 2020 | 5 | 2020 |
| Genetic complexity in the replication-competent latent HIV reservoir increases with untreated infection duration in infected youth ZL Brumme, H Sudderuddin, C Ziemniak, K Luzuriaga, BR Jones, JB Joy, ... Aids 33 (2), 211-218, 2019 | 5 | 2019 |
| The global origins of resistance-associated variants in the non-structural proteins 5A and 5B of the hepatitis C virus BR Jones, AYM Howe, PR Harrigan, JB Joy Virus evolution 4 (1), vex041, 2018 | 4 | 2018 |
| Genetic diversity, compartmentalization, and age of HIV proviruses persisting in CD4+ T cell subsets during long-term combination antiretroviral therapy BR Jones, RL Miller, NN Kinloch, O Tsai, H Rigsby, H Sudderuddin, ... Journal of virology 94 (5), 2020 | 3 | 2020 |
| Tree hook length formulae, Feynman rules and B-series BR Jones, K Yeats arXiv preprint arXiv:1412.6053, 2014 | 3 | 2014 |
| Simulating within host human immunodeficiency virus 1 genome evolution in the persistent reservoir BR Jones, JB Joy Virus Evolution, 2020 | | 2020 |
| The latent reservoir as a genetically diverse archive recapitulating within-host HIV evolutionary history B Jones, N Kinloch, J Horacsek, B Ganase, M Harris, R Harrigan, ... Journal of Virus Eradication 3, 27, 2017 | | 2017 |
| 22 The HIV reservoir as a genetically heterogeneous archive of within-host viral evolution: implications for immunotherapeutic cure strategies BR Jones, NN Kinloch, J Horacsek, P Mwimanzi, B Baraki, K Cobarrubias, ... Journal of Virus Eradication 3, 14, 2017 | | 2017 |
| GENERATING TREES: COMPUTING AND GENERATING FUNCTIONS B JONES MATH 821-Final Projects December 2010, 91, 2010 | | 2010 |
Jeffrey B JoyCentre for Excellence in HIV/AIDS, Department of Medicine, University of British ColumbiaVerified email at cfenet.ubc.ca
