Peter D. Karp
Peter D. Karp
Director of the Bioinformatics Research Group, SRI International
Verified email at - Homepage
Cited by
Cited by
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
R Caspi, T Altman, R Billington, K Dreher, H Foerster, CA Fulcher, ...
Nucleic acids research 42 (D1), D459-D471, 2014
The complete genome sequence of the gastric pathogen Helicobacter pylori
JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, ...
Nature 388 (6642), 539-547, 1997
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information
AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ...
Molecular systems biology 3 (1), 121, 2007
The Genome of the Natural Genetic Engineer Agrobacterium tumefaciens C58
DW Wood, JC Setubal, R Kaul, DE Monks, JP Kitajima, VK Okura, Y Zhou, ...
science 294 (5550), 2317-2323, 2001
EcoCyc: a comprehensive database resource for Escherichia coli
IM Keseler, J Collado-Vides, S Gama-Castro, J Ingraham, S Paley, ...
Nucleic acids research 33 (suppl_1), D334-D337, 2005
The MetaCyc database of metabolic pathways and enzymes
R Caspi, R Billington, CA Fulcher, IM Keseler, A Kothari, ...
Nucleic acids research 46 (D1), D633-D639, 2018
The pathway tools software
PD Karp, S Paley, P Romero
Bioinformatics 18 (suppl_1), S225-S232, 2002
The MetaCyc database of metabolic pathways and enzymes-a 2019 update
R Caspi, R Billington, IM Keseler, A Kothari, M Krummenacker, ...
Nucleic acids research 48 (D1), D445-D453, 2020
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
PD Karp, CA Ouzounis, C Moore-Kochlacs, L Goldovsky, P Kaipa, ...
Nucleic acids research 33 (19), 6083-6089, 2005
The BioCyc collection of microbial genomes and metabolic pathways
PD Karp, R Billington, R Caspi, CA Fulcher, M Latendresse, A Kothari, ...
Briefings in bioinformatics 20 (4), 1085-1093, 2019
EcoCyc: fusing model organism databases with systems biology
IM Keseler, A Mackie, M Peralta-Gil, A Santos-Zavaleta, S Gama-Castro, ...
Nucleic acids research 41 (D1), D605-D612, 2013
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12
IM Keseler, A Mackie, A Santos-Zavaleta, R Billington, ...
Nucleic acids research 45 (D1), D543-D550, 2017
The ecocyc database
PD Karp, M Riley, M Saier, IT Paulsen, J Collado-Vides, SM Paley, ...
Nucleic acids research 30 (1), 56-58, 2002
Computational prediction of human metabolic pathways from the complete human genome
P Romero, J Wagg, ML Green, D Kaiser, M Krummenacker, PD Karp
Genome biology 6, 1-17, 2005
EcoCyc: a comprehensive database of Escherichia coli biology
IM Keseler, J Collado-Vides, A Santos-Zavaleta, M Peralta-Gil, ...
Nucleic acids research 39 (suppl_1), D583-D590, 2010
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PD Karp, SM Paley, M Krummenacker, M Latendresse, JM Dale, TJ Lee, ...
Briefings in bioinformatics 11 (1), 40-79, 2010
The complete genome sequence of Francisella tularensis, the causative agent of tularemia
P Larsson, PCF Oyston, P Chain, MC Chu, M Duffield, HH Fuxelius, ...
Nature genetics 37 (2), 153-159, 2005
The metacyc database
PD Karp, M Riley, SM Paley, A Pellegrini-Toole
Nucleic acids research 30 (1), 59-61, 2002
OKBC: A programmatic foundation for knowledge base interoperability
VK Chaudhri, A Farquhar, R Fikes, PD Karp, JP Rice
Proceedings of the fifteenth national/tenth conference on Artificial …, 1998
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Articles 1–20