Vahid Jalili
Vahid Jalili
Post-Doctoral Researcher, Oregon Health & Science University
Verified email at ohsu.edu
Title
Cited by
Cited by
Year
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
9892018
GenoMetric Query Language: a novel approach to large-scale genomic data management
M Masseroli, P Pinoli, F Venco, A Kaitoua, V Jalili, F Palluzzi, H Muller, ...
Bioinformatics 31 (12), 1881-1888, 2015
882015
Using combined evidence from replicates to evaluate ChIP-seq peaks
V Jalili, M Matteucci, M Masseroli, MJ Morelli
Bioinformatics 31 (17), 2761-2769, 2015
222015
How machine learning will transform biomedicine
J Goecks, V Jalili, LM Heiser, JW Gray
Cell 181 (1), 92-101, 2020
132020
Indexing next-generation sequencing data
V Jalili, M Matteucci, M Masseroli, S Ceri
Information Sciences 384, 90-109, 2017
92017
Next generation indexing for genomic intervals
V Jalili, M Matteucci, J Goecks, Y Deldjoo, S Ceri
IEEE Transactions on Knowledge and Data Engineering 31 (10), 2008-2021, 2018
72018
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ...
Nucleic Acids Research, 2020
62020
MuSERA: multiple sample enriched region assessment
V Jalili, M Matteucci, MJ Morelli, M Masseroli
Briefings in bioinformatics 18 (3), 367-381, 2017
62017
Explorative visual analytics on interval-based genomic data and their metadata
V Jalili, M Matteucci, M Masseroli, S Ceri
BMC bioinformatics 18 (1), 536, 2017
52017
Federated galaxy: Biomedical computing at the frontier
E Afgan, V Jalili, N Goonasekera, J Taylor, J Goecks
2018 IEEE 11th International Conference on Cloud Computing (CLOUD), 871-874, 2018
32018
Cloud bursting galaxy: federated identity and access management
V Jalili, E Afgan, J Taylor, J Goecks
Bioinformatics 36 (1), 1-9, 2020
12020
Reasoning with shapes: profiting cognitive susceptibilities to infer linear mapping transformations between shapes
V Jalili
arXiv preprint arXiv:1709.00158, 2017
12017
Efficient data structures for cross-samples inferences on genomic data
V JALILI
Italy, 2016
12016
Adding software to package management systems can increase their citation by 280%
V Jalili, D Clements, B Gruning, D Blankenberg, J Goecks
bioRxiv, 2020
2020
Accessible, Reproducible, and Scalable Machine Learning for Biomedicine
Q Gu, A Kumar, S Bray, A Creason, A Khanteymoori, V Jalili, B Grüning, ...
bioRxiv, 2020
2020
Storage Media Federation for Galaxy
V Jalili, E Afgan, N Goonasekera, D Baker, J Goecks
F1000Research 7, 2018
2018
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