Niranjan Nagarajan
Niranjan Nagarajan
Senior Group Leader, Genome Institute of Singapore
Verified email at gis.a-star.edu.sg
Title
Cited by
Cited by
Year
Statistical methods for detecting differentially abundant features in clinical metagenomic samples
JR White, N Nagarajan, M Pop
PLoS Comput Biol 5 (4), e1000352, 2009
10022009
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ...
Nature 452 (7190), 991-996, 2008
9882008
The draft genome of sweet orange (Citrus sinensis)
Q Xu, LL Chen, X Ruan, D Chen, A Zhu, C Chen, D Bertrand, WB Jiao, ...
Nature genetics 45 (1), 59-66, 2013
6662013
Comprehensive characterization of cancer driver genes and mutations
MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ...
Cell 173 (2), 371-385. e18, 2018
6172018
Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes
ZJ Zang, I Cutcutache, SL Poon, SL Zhang, JR McPherson, J Tao, ...
Nature genetics 44 (5), 570-574, 2012
5652012
A common BIM deletion polymorphism mediates intrinsic resistance and inferior responses to tyrosine kinase inhibitors in cancer
KP Ng, AM Hillmer, CTH Chuah, WC Juan, TK Ko, ASM Teo, ...
Nature medicine 18 (4), 521, 2012
5162012
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
A Wilm, PPK Aw, D Bertrand, GHT Yeo, SH Ong, CH Wong, CC Khor, ...
Nucleic acids research 40 (22), 11189-11201, 2012
4852012
Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly
ET Lam, A Hastie, C Lin, D Ehrlich, SK Das, MD Austin, P Deshpande, ...
Nature biotechnology 30 (8), 771-776, 2012
4782012
Sequence assembly demystified
N Nagarajan, M Pop
Nature Reviews Genetics 14 (3), 157-167, 2013
4272013
Fast and accurate de novo genome assembly from long uncorrected reads
R Vaser, I Sović, N Nagarajan, M Šikić
Genome research 27 (5), 737-746, 2017
4042017
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
2872017
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
I Sović, M Šikić, A Wilm, SN Fenlon, S Chen, N Nagarajan
Nature communications 7 (1), 1-11, 2016
2412016
Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences
S Gao, WK Sung, N Nagarajan
Journal of Computational Biology 18 (11), 1681-1691, 2011
2052011
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
1922015
A randomized, double-blind placebo controlled trial of balapiravir, a polymerase inhibitor, in adult dengue patients
NM Nguyen, CNB Tran, LK Phung, KTH Duong, HA Huynh, J Farrar, ...
The Journal of infectious diseases 207 (9), 1442-1450, 2013
1662013
In vivo mapping of eukaryotic RNA interactomes reveals principles of higher-order organization and regulation
JGA Aw, Y Shen, A Wilm, M Sun, XN Lim, KL Boon, S Tapsin, YS Chan, ...
Molecular cell 62 (4), 603-617, 2016
1422016
Scaffolding and validation of bacterial genome assemblies using optical restriction maps
N Nagarajan, TD Read, M Pop
Bioinformatics 24 (10), 1229-1235, 2008
1342008
Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare
KR Chng, ASL Tay, C Li, AHQ Ng, J Wang, BK Suri, SA Matta, ...
Nature microbiology 1 (9), 1-10, 2016
1272016
Parametric complexity of sequence assembly: theory and applications to next generation sequencing
N Nagarajan, M Pop
Journal of computational biology 16 (7), 897-908, 2009
1252009
Genus-wide comparative genomics of Malassezia delineates its phylogeny, physiology, and niche adaptation on human skin
G Wu, H Zhao, C Li, MP Rajapakse, WC Wong, J Xu, CW Saunders, ...
PLoS Genet 11 (11), e1005614, 2015
1242015
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