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Duan Ni
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Cross-talk of four types of RNA modification writers defines tumor microenvironment and pharmacogenomic landscape in colorectal cancer
H Chen, J Yao, R Bao, Y Dong, T Zhang, Y Du, G Wang, D Ni, Z Xun, ...
Molecular cancer 20, 1-21, 2021
1462021
Allosteric modulator discovery: from serendipity to structure-based design
S Lu, X He, D Ni, J Zhang
Journal of medicinal chemistry 62 (14), 6405-6421, 2019
1352019
Activation pathway of a G protein-coupled receptor uncovers conformational intermediates as targets for allosteric drug design
S Lu, X He, Z Yang, Z Chai, S Zhou, J Wang, AU Rehman, D Ni, J Pu, ...
Nature Communications 12 (1), 4721, 2021
1292021
Discovery of hidden allosteric sites as novel targets for allosteric drug design
S Lu, M Ji, D Ni, J Zhang
Drug discovery today 23 (2), 359-365, 2018
992018
Discovery of cryptic allosteric sites using reversed allosteric communication by a combined computational and experimental strategy
D Ni, J Wei, X He, AU Rehman, X Li, Y Qiu, J Pu, S Lu, J Zhang
Chemical science 12 (1), 464-476, 2021
902021
Rational design of peptide-based inhibitors disrupting protein-protein interactions
X Wang, D Ni, Y Liu, S Lu
Frontiers in Chemistry 9, 682675, 2021
862021
Emerging roles of allosteric modulators in the regulation of protein‐protein interactions (PPIs): A new paradigm for PPI drug discovery
D Ni, S Lu, J Zhang
Medicinal research reviews 39 (6), 2314-2342, 2019
852019
AlloFinder: a strategy for allosteric modulator discovery and allosterome analyses
M Huang, K Song, X Liu, S Lu, Q Shen, R Wang, J Gao, Y Hong, Q Li, ...
Nucleic acids research 46 (W1), W451-W458, 2018
812018
Deactivation pathway of Ras GTPase underlies conformational substates as targets for drug design
S Lu, D Ni, C Wang, X He, H Lin, Z Wang, J Zhang
ACS Catalysis 9 (8), 7188-7196, 2019
782019
Drugging K-RasG12C through covalent inhibitors: mission possible?
D Ni, X Li, X He, H Zhang, J Zhang, S Lu
Pharmacology & therapeutics 202, 1-17, 2019
742019
Emergence of allosteric drug-resistance mutations: new challenges for allosteric drug discovery
S Lu, Y Qiu, D Ni, X He, J Pu, J Zhang
Drug discovery today 25 (1), 177-184, 2020
722020
Combining allosteric and orthosteric drugs to overcome drug resistance
D Ni, Y Li, Y Qiu, J Pu, S Lu, J Zhang
Trends in pharmacological sciences 41 (5), 336-348, 2020
672020
Unraveling allosteric landscapes of allosterome with ASD
X Liu, S Lu, K Song, Q Shen, D Ni, Q Li, X He, H Zhang, Q Wang, Y Chen, ...
Nucleic acids research 48 (D1), D394-D401, 2020
622020
Mechanism of allosteric activation of SIRT6 revealed by the action of rationally designed activators
S Lu, Y Chen, J Wei, M Zhao, D Ni, X He, J Zhang
Acta Pharmaceutica Sinica B 11 (5), 1355-1361, 2021
572021
Gut-derived acetate promotes B10 cells with antiinflammatory effects
CI Daïen, J Tan, R Audo, J Mielle, LE Quek, JR Krycer, A Angelatos, ...
JCI insight 6 (7), 2021
522021
Mechanistic insights into the effect of phosphorylation on Ras conformational dynamics and its interactions with cell signaling proteins
Y Wang, D Ji, C Lei, Y Chen, Y Qiu, X Li, M Li, D Ni, J Pu, J Zhang, Q Fu, ...
Computational and structural biotechnology journal 19, 1184-1199, 2021
522021
PLX5622 reduces disease severity in lethal CNS infection by off-target inhibition of peripheral inflammatory monocyte production
AG Spiteri, D Ni, ZL Ling, L Macia, IL Campbell, MJ Hofer, NJC King
Frontiers in Immunology 13, 851556, 2022
422022
Along the allostery stream: Recent advances in computational methods for allosteric drug discovery
D Ni, Z Chai, Y Wang, M Li, Z Yu, Y Liu, S Lu, J Zhang
Wiley Interdisciplinary Reviews: Computational Molecular Science 12 (4), e1585, 2022
382022
Insight into the mechanism of allosteric activation of PI3Kα by oncoprotein K-Ras4B
X Li, J Dai, D Ni, X He, H Zhang, J Zhang, Q Fu, Y Liu, S Lu
International Journal of Biological Macromolecules 144, 643-655, 2020
372020
Targeting a cryptic allosteric site of SIRT6 with small-molecule inhibitors that inhibit the migration of pancreatic cancer cells
Q Zhang, Y Chen, D Ni, Z Huang, J Wei, L Feng, JC Su, Y Wei, S Ning, ...
Acta Pharmaceutica Sinica B 12 (2), 876-889, 2022
352022
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