Chih Hsuan Wei

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Zhiyong LuDeputy Director for Literature Search, NCBI; Senior Investigator, NCBI-NLMVerified email at nih.gov
Robert LeamanResearcher, NCBI/NLM/NIHVerified email at nih.gov
Hung-Yu KaoNational Cheng Kung UniversityVerified email at mail.ncku.edu.tw
Yifan PengAssistant Professor at Weill Cornell MedicineVerified email at med.cornell.edu
Sun KimAmazon Alexa AI; National Center for Biotechnology Information (NCBI)Verified email at amazon.com
Carolyn MattinglyAssociate Professor, Biological Sciences, North Carolina State UniversityVerified email at ncsu.edu
Ritu KhareIQVIA Data Science and Advanced AnalyticsVerified email at iqvia.com
Cecilia ArighiUniversity of DelawareVerified email at dbi.udel.edu
Eva HualaPhoenix BioinformaticsVerified email at phoenixbioinformatics.org
Sampo PyysaloUniversity of TurkuVerified email at utu.fi
Filip GinterUniversity of TurkuVerified email at utu.fi
Yves Van de PeerProfessor in Bioinformatics and Genome Biology, Ghent University, BelgiumVerified email at psb.ugent.be
Sophia AnaniadouProfessor, Computer Science, Manchester University, National Centre for Text MiningVerified email at manchester.ac.uk
Jari BjörnePost-doctoral researcher, University of Turku, FinlandVerified email at utu.fi
Sofie Van LandeghemFreelance NLP & ML expertVerified email at oxykodit.com
W John WilburSenior scientist, National Center for Biotechnology InformationVerified email at ncbi.nlm.nih.gov
Rezarta IslamajNational Center for Biotechnology Information, National Library of Medicine, National Institutes ofVerified email at nih.gov
Hong-Jie DaiDepartment of Electrical EngineeringVerified email at nkust.edu.tw

Chih Hsuan Wei

Research Fellow at National Center for Biotechnology Information (NCBI)

Verified email at ncbi.nlm.nih.gov - Homepage

Natural language processing Machine learning Biocuration assistance


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PubTator: a web-based text mining tool for assisting biocuration CH Wei, HY Kao, Z Lu Nucleic acids research 41 (W1), W518-W522, 2013	416	2013
BioCreative V CDR task corpus: a resource for chemical disease relation extraction J Li, Y Sun, RJ Johnson, D Sciaky, CH Wei, R Leaman, AP Davis, ... Database 2016, 2016	217	2016
tmChem: a high performance approach for chemical named entity recognition and normalization R Leaman, CH Wei, Z Lu Journal of cheminformatics 7 (1), S3, 2015	202	2015
Overview of the BioCreative V chemical disease relation (CDR) task CH Wei, Y Peng, R Leaman, AP Davis, CJ Mattingly, J Li, TC Wiegers, ... Proceedings of the fifth BioCreative challenge evaluation workshop 14, 2015	163	2015
The gene normalization task in BioCreative III Z Lu, HY Kao, CH Wei, M Huang, J Liu, CJ Kuo, CN Hsu, RTH Tsai, ... BMC bioinformatics 12 (8), S2, 2011	155	2011
tmVar: a text mining approach for extracting sequence variants in biomedical literature CH Wei, BR Harris, HY Kao, Z Lu Bioinformatics 29 (11), 1433-1439, 2013	149	2013
GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains CH Wei, HY Kao, Z Lu BioMed Research International, 2015	142	2015
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task CH Wei, Y Peng, R Leaman, AP Davis, CJ Mattingly, J Li, TC Wiegers, ... Database 2016, baw032, 2016	119	2016
Large-scale event extraction from literature with multi-level gene normalization S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ... PloS one 8 (4), e55814, 2013	116	2013
PubTator Central: Automated Concept Annotation for Biomedical Full Text Articles CH Wei, A Allot, R Leaman, Z Lu Nucleic Acids Research, 10.1093/nar/gkz389., 2019	89	2019
Cross-species gene normalization by species inference CH Wei, HY Kao BMC bioinformatics 12 (8), S5, 2011	87	2011
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task CN Arighi, B Carterette, KB Cohen, M Krallinger, WJ Wilbur, P Fey, ... Database 2013, 2013	86	2013
Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts CH Wei, BR Harris, D Li, TZ Berardini, E Huala, HY Kao, Z Lu Database 2012, 2012	85	2012
SR4GN: a species recognition software tool for gene normalization CH Wei, HY Kao, Z Lu Plos one 7 (6), e38460, 2012	78	2012
Annotating chemicals, diseases, and their interactions in biomedical literature J Li, Y Sun, R Johnson, D Sciaky, CH Wei, R Leaman, AP Davis, ... Proceedings of the fifth BioCreative challenge evaluation workshop, 173-182, 2015	62	2015
On expert curation and scalability: UniProtKB/Swiss-Prot as a case study S Poux, CN Arighi, M Magrane, A Bateman, CH Wei, Z Lu, E Boutet, ... Bioinformatics 33 (21), 3454-3460, 2017	61	2017
Improving chemical disease relation extraction with rich features and weakly labeled data Y Peng, CH Wei, Z Lu Journal of Cheminformatics 8 (1), 53, 2016	52	2016
tmVar 2.0: Integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine CH Wei, L Phan, J Feltz, R Maiti, T Hefferon, Z Lu Bioinformatics, btx541, 2017	47	2017
Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing J Burger, EK Doughty, R Khare, CH Wei, R Mishra, J Aberdeen, ... Database (oxford) 2014, bau094, 2014	43	2014
LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC A Allot, Y Peng, CH Wei, K Lee, L Phan, Z Lu Nucleic acids research 46 (W1), W530-W536, 2018	39	2018

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