Ilya Ioshikhes
Cited by
Cited by
Nucleosome organization in the Drosophila genome
TN Mavrich, C Jiang, IP Ioshikhes, X Li, BJ Venters, SJ Zanton, ...
Nature 453 (7193), 358-362, 2008
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
TN Mavrich, IP Ioshikhes, BJ Venters, C Jiang, LP Tomsho, J Qi, ...
Genome research 18 (7), 1073-1083, 2008
Nucleosome positions predicted through comparative genomics
IP Ioshikhes, I Albert, SJ Zanton, BF Pugh
Nature genetics 38 (10), 1210-1215, 2006
Large-scale human promoter mapping using CpG islands
IP Ioshikhes, MQ Zhang
Nature genetics 26 (1), 61-63, 2000
Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences
I Ioshikhes, A Bolshoy, K Derenshteyn, M Borodovsky, EN Trifonov
Journal of molecular biology 262 (2), 129-139, 1996
Synergy of human Pol II core promoter elements revealed by statistical sequence analysis
NI Gershenzon, IP Ioshikhes
Bioinformatics 21 (8), 1295-1300, 2005
Functional characterization of core promoter elements: the downstream core element is recognized by TAF1
DH Lee, N Gershenzon, M Gupta, IP Ioshikhes, D Reinberg, BA Lewis
Molecular and cellular biology 25 (21), 9674-9686, 2005
Human milk metagenome: a functional capacity analysis
TL Ward, S Hosid, I Ioshikhes, I Altosaar
BMC microbiology 13 (1), 116, 2013
Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution
M Babcock, A Pavlicek, E Spiteri, CD Kashork, I Ioshikhes, LG Shaffer, ...
Genome research 13 (12), 2519-2532, 2003
Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites
NI Gershenzon, GD Stormo, IP Ioshikhes
Nucleic acids research 33 (7), 2290-2301, 2005
A multi-tissue analysis identifies HLA complex group 9 gene methylation differences in bipolar disorder
Z Kaminsky, M Tochigi, P Jia, M Pal, J Mill, A Kwan, I Ioshikhes, ...
Molecular psychiatry 17 (7), 728-740, 2012
Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure
I Ioshikhes, EN Trifonov, MQ Zhang
Proceedings of the National Academy of Sciences 96 (6), 2891-2895, 1999
The features of Drosophila core promoters revealed by statistical analysis
NI Gershenzon, EN Trifonov, IP Ioshikhes
BMC genomics 7 (1), 161, 2006
Variety of genomic DNA patterns for nucleosome positioning
I Ioshikhes, S Hosid, BF Pugh
Genome research 21 (11), 1863-1871, 2011
Snf2h-mediated chromatin organization and histone H1 dynamics govern cerebellar morphogenesis and neural maturation
M Alvarez-Saavedra, Y De Repentigny, PS Lagali, EVSR Ram, K Yan, ...
Nature communications 5 (1), 1-18, 2014
Nucleosomal DNA sequence database.
I Ioshikhes, EN Trifonov
Nucleic acids research 21 (21), 4857, 1993
Restriction landmark genomic scanning (RLGS) spot identification by second generation virtual RLGS in multiple genomes with multiple enzyme combinations
DJ Smiraglia, R Kazhiyur-Mannar, CC Oakes, YZ Wu, P Liang, T Ansari, ...
BMC genomics 8 (1), 446, 2007
Preferred positions of AA and TT dinucleotides in aligned nucleosomal DNA sequences
I Ioshikhes, A Bolshoy, EN Trifonov
Journal of Biomolecular Structure and Dynamics 9 (6), 1111-1117, 1992
Algorithms for mapping of mRNA targets for microRNA
I Ioshikhes, S Roy, CK Sen
DNA and Cell Biology 26 (4), 265-272, 2007
Structural dynamics of nucleosome core particle: comparison with nucleosomes containing histone variants
A Ramaswamy, I Bahar, I Ioshikhes
PROTEINS: Structure, Function, and Bioinformatics 58 (3), 683-696, 2005
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