Julien Tremblay

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Susannah TringeEnvironmental Genomics and Systems Biology, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Etienne YergeauAssociate professor, Institut national de la recherche scientifiqueVerified email at inrs.ca
Jeff DanglProfessor--HHMI and Dept of Biology; UNC-Chapel HillVerified email at email.unc.edu
Scott YourstoneBioinformaticist, Q2 Lab SolutionsVerified email at q2labsolutions.com
Derek Severi LundbergPostdoc in Weigel Lab, Max Planck Institute for Developmental Biology in Tübingen, Germany.Verified email at tuebingen.mpg.de
Ruth E. LeyDepartment of Microbiome Science, Max Planck Institute for Developmental Biology, TübingenVerified email at tuebingen.mpg.de
Robert C. EdgarIndependentVerified email at drive5.com
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandVerified email at uq.edu.au
Sur Herrera ParedesPost-doctoral fellow. Department of Biology, Stanford UniversityVerified email at stanford.edu
Jase GehringUniversity of WashingtonVerified email at uw.edu
Anna EngelbrektsonArizona State University Biodesign InstituteVerified email at asu.edu
Thomas KingDFOVerified email at dfo-mpo.gc.ca
Shaomei HeUniversity of Wisconsin-MadisonVerified email at wisc.edu
Kenneth Ka Ho LeeSchool of Biomedical Sciences, Chinese University of HongVerified email at cuhk.edu.hk
Chad W. MacPhersonMcGill UniversityVerified email at lallemand.com
Tanja WoykeDOE Joint Genome InstituteVerified email at lbl.gov
Katherine (Trina) McMahonProfessor of Bacteriology, and Civil and Environmental Engineering, University of Wisconsin MadisonVerified email at engr.wisc.edu
Mary Ann MoranDepartment of Marine Sciences, University of GeorgiaVerified email at uga.edu
Matthew L. BendallWeill Cornell Medicine, Division of Infectious DiseasesVerified email at gwu.edu
Philippe ConstantINRS Institut Armand-FrappierVerified email at iaf.inrs.ca

Julien Tremblay

Staff scientist, National Research Council Canada

Verified email at nrc-cnrc.gc.ca - Homepage

Bioinformatics microbiome high throughput sequencing metagenomics metatranscriptomics


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Defining the core Arabidopsis thaliana root microbiome DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ... Nature 488 (7409), 86-90, 2012	1893	2012
Primer and platform effects on 16S rRNA tag sequencing J Tremblay, K Singh, A Fern, ES Kirton, S He, T Woyke, J Lee, F Chen, ... Frontiers in microbiology 6, 771, 2015	392	2015
Swarming motility: a multicellular behaviour conferring antimicrobial resistance S Lai, J Tremblay, E Déziel Environmental microbiology 11 (1), 126-136, 2009	213	2009
Self‐produced extracellular stimuli modulate the Pseudomonas aeruginosa swarming motility behaviour J Tremblay, AP Richardson, F Lépine, E Déziel Environmental microbiology 9 (10), 2622-2630, 2007	199	2007
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ... The ISME journal 10 (7), 1589-1601, 2016	167	2016
Increase in Rhamnolipid Synthesis under Iron-Limiting Conditions Influences Surface Motility and Biofilm Formation in Pseudomonas aeruginosa R Glick, C Gilmour, J Tremblay, S Satanower, O Avidan, E Déziel, ... Journal of bacteriology 192 (12), 2973-2980, 2010	157	2010
Increase in Rhamnolipid Synthesis under Iron-Limiting Conditions Influences Surface Motility and Biofilm Formation in Pseudomonas aeruginosa R Glick, C Gilmour, J Tremblay, S Satanower, O Avidan, E Déziel, ... Journal of bacteriology 192 (12), 2973-2980, 2010	157	2010
Improving the reproducibility of Pseudomonas aeruginosa swarming motility assays J Tremblay, E Déziel Journal of basic microbiology 48 (6), 509-515, 2008	130	2008
Gene expression in Pseudomonas aeruginosa swarming motility J Tremblay, E Déziel BMC genomics 11 (1), 1-15, 2010	125	2010
The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling SR Lindemann, JJ Moran, JC Stegen, RS Renslow, JR Hutchison, ... Frontiers in microbiology 4, 323, 2013	84	2013
Transplanting soil microbiomes leads to lasting effects on willow growth, but not on the rhizosphere microbiome E Yergeau, TH Bell, J Champagne, C Maynard, S Tardif, J Tremblay, ... Frontiers in microbiology 6, 1436, 2015	76	2015
Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions S He, SA Malfatti, JW McFarland, FE Anderson, A Pati, M Huntemann, ... MBio 6 (3), e00066-15, 2015	76	2015
Chemical dispersants enhance the activity of oil-and gas condensate-degrading marine bacteria J Tremblay, E Yergeau, N Fortin, S Cobanli, M Elias, TL King, K Lee, ... The ISME journal 11 (12), 2793-2808, 2017	69	2017
Gut bacterial microbiota and its resistome rapidly recover to basal state levels after short-term amoxicillin-clavulanic acid treatment in healthy adults CW MacPherson, O Mathieu, J Tremblay, J Champagne, A Nantel, ... Scientific reports 8 (1), 1-14, 2018	55	2018
GenPipes: an open-source framework for distributed and scalable genomic analyses M Bourgey, R Dali, R Eveleigh, KC Chen, L Letourneau, J Fillon, ... Gigascience 8 (6), giz037, 2019	47	2019
Metagenomic survey of the taxonomic and functional microbial communities of seawater and sea ice from the Canadian Arctic E Yergeau, C Michel, J Tremblay, A Niemi, TL King, J Wyglinski, K Lee, ... Scientific reports 7 (1), 1-10, 2017	46	2017
Drosophila melanogaster as a model host for the Burkholderia cepacia complex J Castonguay-Vanier, L Vial, J Tremblay, E Déziel PLoS One 5 (7), e11467, 2010	45	2010
Soil contamination alters the willow root and rhizosphere metatranscriptome and the root–rhizosphere interactome E Yergeau, J Tremblay, S Joly, M Labrecque, C Maynard, FE Pitre, ... The ISME journal 12 (3), 869-884, 2018	39	2018
The willow microbiome is influenced by soil petroleum-hydrocarbon concentration with plant compartment-specific effects S Tardif, É Yergeau, J Tremblay, P Legendre, LG Whyte, CW Greer Frontiers in microbiology 7, 1363, 2016	37	2016
Long-term land use affects phosphorus speciation and the composition of phosphorus cycling genes in agricultural soils J Liu, BJ Cade-Menun, J Yang, Y Hu, CW Liu, J Tremblay, K LaForge, ... Frontiers in microbiology 9, 1643, 2018	33	2018

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