|Topological structure analysis of the protein–protein interaction network in budding yeast|
D Bu, Y Zhao, L Cai, H Xue, X Zhu, H Lu, J Zhang, S Sun, L Ling, N Zhang, ...
Nucleic acids research 31 (9), 2443-2450, 2003
|Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids|
G He, X Zhu, AA Elling, L Chen, X Wang, L Guo, M Liang, H He, H Zhang, ...
The Plant Cell 22 (1), 17-33, 2010
|Evolutionarily conserved multisubunit RBL2/p130 and E2F4 protein complex represses human cell cycle-dependent genes in quiescence|
L Litovchick, S Sadasivam, L Florens, X Zhu, SK Swanson, S Velmurugan, ...
Molecular cell 26 (4), 539-551, 2007
|Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells|
Y Tan, B Zhang, T Wu, G SkogerbÝ, X Zhu, X Guo, S He, R Chen
BMC molecular biology 10 (1), 12, 2009
|Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression|
W Deng, X Zhu, G SkogerbÝ, Y Zhao, Z Fu, Y Wang, H He, L Cai, H Sun, ...
Genome research 16 (1), 20-29, 2006
|Model-based analysis of two-color arrays (MA2C)|
JS Song, WE Johnson, X Zhu, X Zhang, W Li, AK Manrai, JS Liu, R Chen, ...
Genome biology 8 (8), R178, 2007
|Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray|
H He, J Wang, T Liu, XS Liu, T Li, Y Wang, Z Qian, H Zheng, X Zhu, T Wu, ...
Genome research 17 (10), 1471-1477, 2007
|NPInter: the noncoding RNAs and protein related biomacromolecules interaction database|
T Wu, J Wang, C Liu, Y Zhang, B Shi, X Zhu, Z Zhang, G SkogerbÝ, ...
Nucleic acids research 34 (suppl_1), D150-D152, 2006
|MicroRNA-encoding long non-coding RNAs|
S He, H Su, C Liu, G SkogerbÝ, H He, D He, X Zhu, T Liu, Y Zhao, R Chen
BMC genomics 9 (1), 236, 2008
|Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs|
J Chen, AA Shishkin, X Zhu, S Kadri, I Maza, M Guttman, JH Hanna, ...
Genome biology 17 (1), 19, 2016
|Prediction of structured non‐coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae|
K Missal, X Zhu, D Rose, W Deng, G SkogerbÝ, R Chen, PF Stadler
Journal of Experimental Zoology Part B: Molecular and Developmental†…, 2006
|The interactome as a tree—an attempt to visualize the protein–protein interaction network in yeast|
H Lu, X Zhu, H Liu, G SkogerbÝ, J Zhang, Y Zhang, L Cai, Y Zhao, S Sun, ...
Nucleic acids research 32 (16), 4804-4811, 2004
|Phylophenetic properties of metabolic pathway topologies as revealed by global analysis|
Y Zhang, S Li, G SkogerbÝ, Z Zhang, X Zhu, Z Zhang, S Sun, H Lu, B Shi, ...
BMC bioinformatics 7 (1), 252, 2006
|Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray|
H He, L Cai, G SkogerbÝ, W Deng, T Liu, X Zhu, Y Wang, D Jia, Z Zhang, ...
Nucleic acids research 34 (10), 2976-2983, 2006
|Expression analysis of miRNAs and highly‐expressed small RNAs in two rice subspecies and their reciprocal hybrids|
F Chen, G He, H He, W Chen, X Zhu, M Liang, L Chen, XW Deng
Journal of integrative plant biology 52 (11), 971-980, 2010
|Accurate prediction of transposon-derived piRNAs by integrating various sequential and physicochemical features|
L Luo, D Li, W Zhang, S Tu, X Zhu, G Tian
PloS one 11 (4), e0153268, 2016
|Integrated analysis of multiple data sources reveals modular structure of biological networks|
H Lu, B Shi, G Wu, Y Zhang, X Zhu, Z Zhang, C Liu, Y Zhao, T Wu, J Wang, ...
Biochemical and biophysical research communications 345 (1), 302-309, 2006
|Identifying Hfq-binding small RNA targets in Escherichia coli|
Y Zhang, S Sun, T Wu, J Wang, C Liu, L Chen, X Zhu, Y Zhao, Z Zhang, ...
Biochemical and biophysical research communications 343 (3), 950-955, 2006
|Systematic identification and characterization of chicken ( Gallus gallus ) ncRNAs|
Y Zhang, J Wang, S Huang, X Zhu, J Liu, N Yang, D Song, R Wu, W Deng, ...
Nucleic acids research 37 (19), 6562-6574, 2009
|Dynamic changes in subgraph preference profiles of crucial transcription factors|
Z Zhang, C Liu, G SkogerbÝ, X Zhu, H Lu, L Chen, B Shi, Y Zhang, ...
PLoS computational biology 2 (5), e47, 2006