Pascal Notin

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Yarin GalAssociate Professor, University of OxfordVerified email at cs.ox.ac.uk
Debora MarksSystems Biology, Harvard Medical School, Broad Institute of Harvard and MITVerified email at hms.harvard.edu
Aidan GomezCohereVerified email at cohere.ai
Jonathan FrazerCentre for Genomic Regulation & HarvardVerified email at hms.harvard.edu
Mafalda DiasCRG (Centre for Genomic Regulation)Verified email at crg.eu
Kelly Paige BrockHarvard Medical SchoolVerified email at hms.harvard.edu
José Miguel Hernández-LobatoProfessor of Machine Learning, University of CambridgeVerified email at cam.ac.uk
Arash MehrjouETH Zürich - Max Planck InstituteVerified email at tuebingen.mpg.de
Andrew JessonOATML, University of OxfordVerified email at cs.ox.ac.uk
Patrick SchwabGSK AI/MLVerified email at hest.ethz.ch
Stefan BauerHelmholtz | TUM | CIFARVerified email at kth.se
Ashkan SoleymaniCS PhD student at Massachusetts Institute of TechnologyVerified email at mit.edu

Pascal Notin

Department of Computer Science, University of Oxford

Verified email at cs.ox.ac.uk - Homepage

Artificial Intelligence Deep learning Computational biology Genomics Drug design


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Disease variant prediction with deep generative models of evolutionary data J Frazer, P Notin, M Dias, A Gomez, JK Min, K Brock, Y Gal, DS Marks Nature 599 (7883), 91-95, 2021	140	2021
Tranception: protein fitness prediction with autoregressive transformers and inference-time retrieval P Notin, M Dias, J Frazer, JM Hurtado, AN Gomez, D Marks, Y Gal International Conference on Machine Learning (ICML), 16990-17017, 2022	23	2022
Improving black-box optimization in VAE latent space using decoder uncertainty P Notin, JM Hernández-Lobato, Y Gal Advances in Neural Information Processing Systems (NeurIPS) 34, 802-814, 2021	21	2021
Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning J Frazer, P Notin, M Dias, A Gomez, K Brock, Y Gal, DS Marks bioRxiv, 2020.12. 21.423785, 2020	14	2020
RITA: a Study on Scaling Up Generative Protein Sequence Models D Hesslow, N Zanichelli, P Notin, I Poli, D Marks ICML, Workshop on Computational Biology (WCB), 2022	12*	2022
GeneDisco: A Benchmark for Experimental Design in Drug Discovery A Mehrjou, A Soleymani, A Jesson, P Notin, Y Gal, S Bauer, P Schwab International Conference on Learning Representations (ICLR), 2021	8	2021
Principled uncertainty estimation for high dimensional data P Notin, JM Hernández-Lobato, Y Gal ICML, Workshop on Uncertainty and Robustness in Deep Learning (UDL), 2020	4	2020
Learning from pre-pandemic data to forecast viral antibody escape NN Thadani, S Gurev, P Notin, N Youssef, NJ Rollins, C Sander, Y Gal, ... bioRxiv, 2022.07. 21.501023, 2022	3	2022
Improving compute efficacy frontiers with SliceOut P Notin, AN Gomez, J Yoo, Y Gal arXiv preprint arXiv:2007.10909, 2020	2*	2020
Mixtures of large-scale dynamic functional brain network modes C Gohil, E Roberts, R Timms, A Skates, C Higgins, A Quinn, U Pervaiz, ... NeuroImage, 2022	1	2022
TranceptEVE: Combining Family-specific and Family-agnostic Models of Protein Sequences for Improved Fitness Prediction PM Notin, L Van Niekerk, AW Kollasch, D Ritter, Y Gal, D Marks NeurIPS, LMRL workshop, 2022		2022
DiscoBAX-Discovery of optimal intervention sets in genomic experiment design C Lyle, A Mehrjou, P Notin, A Jesson, S Bauer, Y Gal, P Schwab

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