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Keegan Korthauer
Keegan Korthauer
Assistant Professor, University of British Columbia
Verified email at stat.ubc.ca - Homepage
Title
Cited by
Cited by
Year
Transparency and reproducibility in artificial intelligence
B Haibe-Kains, GA Adam, A Hosny, F Khodakarami, ...
Nature 586 (7829), E14-E16, 2020
3332020
A statistical approach for identifying differential distributions in single-cell RNA-seq experiments
KD Korthauer, LF Chu, MA Newton, Y Li, J Thomson, R Stewart, ...
Genome biology 17, 1-15, 2016
2992016
A somatically acquired enhancer of the androgen receptor is a noncoding driver in advanced prostate cancer
DY Takeda, S Spisák, JH Seo, C Bell, E O’Connor, K Korthauer, D Ribli, ...
Cell 174 (2), 422-432. e13, 2018
2762018
A practical guide to methods controlling false discoveries in computational biology
K Korthauer, PK Kimes, C Duvallet, A Reyes, A Subramanian, M Teng, ...
Genome biology 20, 1-21, 2019
2672019
Detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes
PV Nuzzo, JE Berchuck, K Korthauer, S Spisak, AH Nassar, S Abou Alaiwi, ...
Nature medicine 26 (7), 1041-1043, 2020
2092020
Prostate cancer reactivates developmental epigenomic programs during metastatic progression
MM Pomerantz, X Qiu, Y Zhu, DY Takeda, W Pan, SC Baca, A Gusev, ...
Nature genetics 52 (8), 790-799, 2020
1822020
Detection and accurate False Discovery Rate control of differentially methylated regions from Whole Genome Bisulfite Sequencing
K Korthauer, S Chakraborty, Y Benjamini, RA Irizarry
Biostatistics, kxy007, 2019
1312019
High‐throughput identification of RNA nuclear enrichment sequences
CJ Shukla, AL McCorkindale, C Gerhardinger, KD Korthauer, MN Cabili, ...
The EMBO journal 37 (6), e98452, 2018
1092018
The Genetic Network Controlling the Arabidopsis Transcriptional Response to Pseudomonas syringae pv. maculicola: Roles of Major Regulators and the …
L Wang, RM Mitra, KD Hasselmann, M Sato, L Lenarz-Wyatt, JD Cohen, ...
Molecular plant-microbe interactions 21 (11), 1408-1420, 2008
892008
Reprogramming of the FOXA1 cistrome in treatment-emergent neuroendocrine prostate cancer
SC Baca, DY Takeda, JH Seo, J Hwang, SY Ku, R Arafeh, T Arnoff, ...
Nature communications 12 (1), 1979, 2021
882021
CDK4/6 inhibition reprograms the breast cancer enhancer landscape by stimulating AP-1 transcriptional activity
AC Watt, P Cejas, MJ DeCristo, O Metzger-Filho, EYN Lam, X Qiu, ...
Nature Cancer 2 (1), 34-48, 2021
582021
Plasma cell-free DNA variant analysis compared with methylated DNA analysis in renal cell carcinoma
K Lasseter, AH Nassar, L Hamieh, JE Berchuck, PV Nuzzo, K Korthauer, ...
Genetics in Medicine 22 (8), 1366-1373, 2020
522020
Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer
C Bodelon, S Vinokurova, JN Sampson, JA den Boon, JL Walker, ...
Carcinogenesis 37 (2), 188-196, 2016
522016
Androgen receptor and MYC equilibration centralizes on developmental super-enhancer
H Guo, Y Wu, M Nouri, S Spisak, JW Russo, AG Sowalsky, MM Pomerantz, ...
Nature communications 12 (1), 7308, 2021
432021
MADGiC: a model-based approach for identifying driver genes in cancer
KD Korthauer, C Kendziorski
Bioinformatics 31 (10), 1526-1535, 2015
412015
Detecting neuroendocrine prostate cancer through tissue-informed cell-free DNA methylation analysis
JE Berchuck, SC Baca, HM McClure, K Korthauer, HK Tsai, PV Nuzzo, ...
Clinical Cancer Research 28 (5), 928-938, 2022
322022
Methods for collapsing multiple rare variants in whole‐genome sequence data
YJ Sung, KD Korthauer, MD Swartz, CD Engelman
Genetic epidemiology 38 (S1), S13-S20, 2014
242014
Genome-wide repressive capacity of promoter DNA methylation is revealed through epigenomic manipulation
K Korthauer, RA Irizarry
bioRxiv, 381145, 2018
162018
Reversal of viral and epigenetic HLA class I repression in Merkel cell carcinoma
PC Lee, S Klaeger, PM Le, K Korthauer, J Cheng, ...
The Journal of clinical investigation 132 (13), 2022
152022
Advances in Statistical Bioinformatics: Models and Integrative Inference for High-Throughput Data
KA Do, ZS Qin, M Vannucci
Cambridge University Press, 2013
152013
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Articles 1–20