Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling LA Salas, Z Zhang, DC Koestler, RA Butler, HM Hansen, AM Molinaro, ... Nature communications 13 (1), 761, 2022 | 154 | 2022 |
Tracing human stem cell lineage during development using DNA methylation LA Salas, JK Wiencke, DC Koestler, Z Zhang, BC Christensen, KT Kelsey Genome research 28 (9), 1285-1295, 2018 | 38 | 2018 |
HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA … Z Zhang, JK Wiencke, KT Kelsey, DC Koestler, BC Christensen, LA Salas Journal of translational medicine 20 (1), 516, 2022 | 24 | 2022 |
Deciphering the role of immune cell composition in epigenetic age acceleration: Insights from cell‐type deconvolution applied to human blood epigenetic clocks Z Zhang, SR Reynolds, HG Stolrow, JQ Chen, BC Christensen, LA Salas Aging Cell 23 (3), e14071, 2024 | 16 | 2024 |
DNA methylation as a pharmacodynamic marker of glucocorticoid response and glioma survival JK Wiencke, AM Molinaro, G Warrier, T Rice, J Clarke, JW Taylor, ... Nature communications 13 (1), 5505, 2022 | 12 | 2022 |
Assessment of emerging pretraining strategies in interpretable multimodal deep learning for cancer prognostication ZL Azher, A Suvarna, JQ Chen, Z Zhang, BC Christensen, LA Salas, ... BioData Mining 16 (1), 23, 2023 | 11 | 2023 |
Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation Z Zhang, JK Wiencke, KT Kelsey, DC Koestler, AM Molinaro, SC Pike, ... Frontiers in Neuroscience 17, 1198243, 2023 | 10 | 2023 |
Navigating the hydroxymethylome: experimental biases and quality control tools for the tandem bisulfite and oxidative bisulfite Illumina microarrays Z Zhang, MK Lee, L Perreard, KT Kelsey, BC Christensen, LA Salas Epigenomics 14 (3), 139-152, 2022 | 10 | 2022 |
HiTAIC: hierarchical tumor artificial intelligence classifier traces tissue of origin and tumor type in primary and metastasized tumors using DNA methylation Z Zhang, Y Lu, S Vosoughi, JJ Levy, BC Christensen, LA Salas NAR cancer 5 (2), zcad017, 2023 | 8 | 2023 |
Comparative analysis of the DNA methylation landscape in CD4, CD8, and B memory lineages Z Zhang, R Butler, DC Koestler, S Bell-Glenn, G Warrier, AM Molinaro, ... Clinical Epigenetics 14 (1), 173, 2022 | 8 | 2022 |
Absence of an embryonic stem cell DNA methylation signature in human cancer Z Zhang, JK Wiencke, DC Koestler, LA Salas, BC Christensen, KT Kelsey BMC cancer 19, 1-12, 2019 | 8 | 2019 |
Immunological shifts during early-stage Parkinson’s disease identified with DNA methylation data on longitudinally collected blood samples SC Pike, M Havrda, F Gilli, Z Zhang, LA Salas npj Parkinson's Disease 10 (1), 21, 2024 | 6 | 2024 |
Down syndrome altered cell composition in blood, brain, and buccal swab samples profiled by DNA-methylation-based cell-type deconvolution Z Zhang, HG Stolrow, BC Christensen, LA Salas Cells 12 (8), 1168, 2023 | 6 | 2023 |
MethylMasteR: a comparison and customization of methylation-based copy number variation calling software in cancers harboring large scale chromosomal deletions MP Mariani, JA Chen, Z Zhang, SC Pike, LA Salas Frontiers in bioinformatics 2, 859828, 2022 | 4 | 2022 |
Evaluation of serum CEA for the gastrointestinal cancer diagnosis using different cut-off values DZ Ji, Z Zhang, HG Xu Int J Clin Exp Pathol 9 (8), 7807-7812, 2016 | 4 | 2016 |
Identification of a foetal epigenetic compartment in adult human kidney JK Wiencke, Z Zhang, DC Koestler, LA Salas, AM Molinaro, ... Epigenetics 17 (3), 335-355, 2022 | 2 | 2022 |
Immunomethylomic profiles of long-term head and neck squamous cell carcinoma survivors on immune checkpoint inhibitors MK Lee, Z Zhang, K Sehgal, R Butler, H Stolrow, G Ramush, K Shirai, ... Epigenomics, 1-9, 2024 | 1 | 2024 |
Associations in cell type-specific hydroxymethylation and transcriptional alterations of pediatric central nervous system tumors MK Lee, N Azizgolshani, Z Zhang, L Perreard, FW Kolling, LN Nguyen, ... Nature Communications 15 (1), 3635, 2024 | 1 | 2024 |
Tumor microenvironment deconvolution identifies cell-type-independent aberrant DNA methylation and gene expression in prostate cancer SR Reynolds, Z Zhang, LA Salas, BC Christensen Clinical epigenetics 16 (1), 5, 2024 | 1 | 2024 |
Report of China’s research growth and development in clinical microbiology Y Wang, Z Zhang, Y Qi, B Gu, P Ma Journal of Laboratory and Precision Medicine 2 (7), 2017 | 1 | 2017 |