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Ze Zhang
Ze Zhang
Postdoctoral Research Fellow, Dana-Farber Cancer Institute, Harvard Medical School
Verified email at dfci.harvard.edu - Homepage
Title
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Cited by
Year
Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling
LA Salas, Z Zhang, DC Koestler, RA Butler, HM Hansen, AM Molinaro, ...
Nature communications 13 (1), 761, 2022
1542022
Tracing human stem cell lineage during development using DNA methylation
LA Salas, JK Wiencke, DC Koestler, Z Zhang, BC Christensen, KT Kelsey
Genome research 28 (9), 1285-1295, 2018
382018
HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA …
Z Zhang, JK Wiencke, KT Kelsey, DC Koestler, BC Christensen, LA Salas
Journal of translational medicine 20 (1), 516, 2022
242022
Deciphering the role of immune cell composition in epigenetic age acceleration: Insights from cell‐type deconvolution applied to human blood epigenetic clocks
Z Zhang, SR Reynolds, HG Stolrow, JQ Chen, BC Christensen, LA Salas
Aging Cell 23 (3), e14071, 2024
162024
DNA methylation as a pharmacodynamic marker of glucocorticoid response and glioma survival
JK Wiencke, AM Molinaro, G Warrier, T Rice, J Clarke, JW Taylor, ...
Nature communications 13 (1), 5505, 2022
122022
Assessment of emerging pretraining strategies in interpretable multimodal deep learning for cancer prognostication
ZL Azher, A Suvarna, JQ Chen, Z Zhang, BC Christensen, LA Salas, ...
BioData Mining 16 (1), 23, 2023
112023
Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation
Z Zhang, JK Wiencke, KT Kelsey, DC Koestler, AM Molinaro, SC Pike, ...
Frontiers in Neuroscience 17, 1198243, 2023
102023
Navigating the hydroxymethylome: experimental biases and quality control tools for the tandem bisulfite and oxidative bisulfite Illumina microarrays
Z Zhang, MK Lee, L Perreard, KT Kelsey, BC Christensen, LA Salas
Epigenomics 14 (3), 139-152, 2022
102022
HiTAIC: hierarchical tumor artificial intelligence classifier traces tissue of origin and tumor type in primary and metastasized tumors using DNA methylation
Z Zhang, Y Lu, S Vosoughi, JJ Levy, BC Christensen, LA Salas
NAR cancer 5 (2), zcad017, 2023
82023
Comparative analysis of the DNA methylation landscape in CD4, CD8, and B memory lineages
Z Zhang, R Butler, DC Koestler, S Bell-Glenn, G Warrier, AM Molinaro, ...
Clinical Epigenetics 14 (1), 173, 2022
82022
Absence of an embryonic stem cell DNA methylation signature in human cancer
Z Zhang, JK Wiencke, DC Koestler, LA Salas, BC Christensen, KT Kelsey
BMC cancer 19, 1-12, 2019
82019
Immunological shifts during early-stage Parkinson’s disease identified with DNA methylation data on longitudinally collected blood samples
SC Pike, M Havrda, F Gilli, Z Zhang, LA Salas
npj Parkinson's Disease 10 (1), 21, 2024
62024
Down syndrome altered cell composition in blood, brain, and buccal swab samples profiled by DNA-methylation-based cell-type deconvolution
Z Zhang, HG Stolrow, BC Christensen, LA Salas
Cells 12 (8), 1168, 2023
62023
MethylMasteR: a comparison and customization of methylation-based copy number variation calling software in cancers harboring large scale chromosomal deletions
MP Mariani, JA Chen, Z Zhang, SC Pike, LA Salas
Frontiers in bioinformatics 2, 859828, 2022
42022
Evaluation of serum CEA for the gastrointestinal cancer diagnosis using different cut-off values
DZ Ji, Z Zhang, HG Xu
Int J Clin Exp Pathol 9 (8), 7807-7812, 2016
42016
Identification of a foetal epigenetic compartment in adult human kidney
JK Wiencke, Z Zhang, DC Koestler, LA Salas, AM Molinaro, ...
Epigenetics 17 (3), 335-355, 2022
22022
Immunomethylomic profiles of long-term head and neck squamous cell carcinoma survivors on immune checkpoint inhibitors
MK Lee, Z Zhang, K Sehgal, R Butler, H Stolrow, G Ramush, K Shirai, ...
Epigenomics, 1-9, 2024
12024
Associations in cell type-specific hydroxymethylation and transcriptional alterations of pediatric central nervous system tumors
MK Lee, N Azizgolshani, Z Zhang, L Perreard, FW Kolling, LN Nguyen, ...
Nature Communications 15 (1), 3635, 2024
12024
Tumor microenvironment deconvolution identifies cell-type-independent aberrant DNA methylation and gene expression in prostate cancer
SR Reynolds, Z Zhang, LA Salas, BC Christensen
Clinical epigenetics 16 (1), 5, 2024
12024
Report of China’s research growth and development in clinical microbiology
Y Wang, Z Zhang, Y Qi, B Gu, P Ma
Journal of Laboratory and Precision Medicine 2 (7), 2017
12017
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