Ali Bashashati
TitleCited byYear
The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups
C Curtis, SP Shah, SF Chin, G Turashvili, OM Rueda, MJ Dunning, ...
Nature 486 (7403), 346, 2012
30242012
The clonal and mutational evolution spectrum of primary triple-negative breast cancers
SP Shah, A Roth, R Goya, A Oloumi, G Ha, Y Zhao, G Turashvili, J Ding, ...
Nature 486 (7403), 395, 2012
14172012
A survey of signal processing algorithms in brain–computer interfaces based on electrical brain signals
A Bashashati, M Fatourechi, RK Ward, GE Birch
Journal of Neural engineering 4 (2), R32, 2007
8412007
EMG and EOG artifacts in brain computer interface systems: A survey
M Fatourechi, A Bashashati, RK Ward, GE Birch
Clinical neurophysiology 118 (3), 480-494, 2007
4942007
Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution
P Eirew, A Steif, J Khattra, G Ha, D Yap, H Farahani, K Gelmon, S Chia, ...
Nature 518 (7539), 422, 2015
3832015
A comprehensive survey of brain interface technology designs
SG Mason, A Bashashati, M Fatourechi, KF Navarro, GE Birch
Annals of biomedical engineering 35 (2), 137-169, 2007
3252007
Distinct evolutionary trajectories of primary high‐grade serous ovarian cancers revealed through spatial mutational profiling
A Bashashati, G Ha, A Tone, J Ding, LM Prentice, A Roth, J Rosner, ...
The Journal of pathology 231 (1), 21-34, 2013
2912013
Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer
G Ha, A Roth, D Lai, A Bashashati, J Ding, R Goya, R Giuliany, J Rosner, ...
Genome research 22 (10), 1995-2007, 2012
1632012
JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data
A Roth, J Ding, R Morin, A Crisan, G Ha, R Giuliany, A Bashashati, M Hirst, ...
Bioinformatics 28 (7), 907-913, 2012
1622012
Brain-computer interface design for asynchronous control applications: improvements to the LF-ASD asynchronous brain switch
JF Borisoff, SG Mason, A Bashashati, GE Birch
IEEE Transactions on Biomedical Engineering 51 (6), 985-992, 2004
1592004
TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data
G Ha, A Roth, J Khattra, J Ho, D Yap, LM Prentice, N Melnyk, ...
Genome research 24 (11), 1881-1893, 2014
1572014
Diffuse large B-cell lymphoma: reduced CD20 expression is associated with an inferior survival
NA Johnson, M Boyle, A Bashashati, S Leach, A Brooks-Wilson, LH Sehn, ...
Blood 113 (16), 3773-3780, 2009
1332009
DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer
A Bashashati, G Haffari, J Ding, G Ha, K Lui, J Rosner, DG Huntsman, ...
Genome biology 13 (12), R124, 2012
1182012
A survey of flow cytometry data analysis methods
A Bashashati, RR Brinkman
Advances in bioinformatics 2009, 2009
1182009
Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer
A McPherson, A Roth, E Laks, T Masud, A Bashashati, AW Zhang, G Ha, ...
Nature genetics 48 (7), 758, 2016
1142016
Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data
J Ding, A Bashashati, A Roth, A Oloumi, K Tse, T Zeng, G Haffari, M Hirst, ...
Bioinformatics 28 (2), 167-175, 2011
1102011
Merging mixture components for cell population identification in flow cytometry
G Finak, A Bashashati, R Brinkman, R Gottardo
Advances in bioinformatics 2009, 2009
1042009
Per‐channel basis normalization methods for flow cytometry data
F Hahne, AH Khodabakhshi, A Bashashati, CJ Wong, RD Gascoyne, ...
Cytometry Part A: The Journal of the International Society for Advancement …, 2010
782010
Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes
YK Wang, A Bashashati, MS Anglesio, DR Cochrane, DS Grewal, G Ha, ...
Nature genetics 49 (6), 856, 2017
702017
Histological transformation and progression in follicular lymphoma: a clonal evolution study
R Kridel, FC Chan, A Mottok, M Boyle, P Farinha, K Tan, B Meissner, ...
PLoS medicine 13 (12), e1002197, 2016
682016
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Articles 1–20