Sofia Kyriazopoulou-Panagiotopoulou
Sofia Kyriazopoulou-Panagiotopoulou
Illumina, 10x Genomics, Stanford University Department of Computer Science
Verified email at alumni.stanford.edu
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
10854*2012
Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
GXY Zheng, BT Lau, M Schnall-Levin, M Jarosz, JM Bell, CM Hindson, ...
Nature biotechnology 34 (3), 303-311, 2016
4412016
Extensive variation in chromatin states across humans
M Kasowski, S Kyriazopoulou-Panagiotopoulou, F Grubert, JB Zaugg, ...
Science 342 (6159), 750-752, 2013
3192013
Extensive sequencing of seven human genomes to characterize benchmark reference materials
JM Zook, D Catoe, J McDaniel, L Vang, N Spies, A Sidow, Z Weng, Y Liu, ...
Scientific data 3 (1), 1-26, 2016
3082016
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1-16, 2019
1872019
Predicting splicing from primary sequence with deep learning
K Jaganathan, SK Panagiotopoulou, JF McRae, SF Darbandi, D Knowles, ...
Cell 176 (3), 535-548. e24, 2019
1772019
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
A Kundaje, S Kyriazopoulou-Panagiotopoulou, M Libbrecht, CL Smith, ...
Genome research 22 (9), 1735-1747, 2012
1612012
Resolving the full spectrum of human genome variation using Linked-Reads
P Marks, S Garcia, AM Barrio, K Belhocine, J Bernate, R Bharadwaj, ...
Genome research 29 (4), 635-645, 2019
602019
Systems and methods for determining structural variation and phasing using variant call data
S Kyriazopoulou-Panagiotopoulou, P Marks, M Schnall-Levin, X Zheng, ...
US Patent App. 15/019,928, 2016
302016
Reconstruction of genealogical relationships with applications to Phase III of HapMap
S Kyriazopoulou-Panagiotopoulou, D Kashef Haghighi, SJ Aerni, ...
Bioinformatics 27 (13), i333-i341, 2011
202011
Multi-platform discovery of haplotype-resolved structural variation in human genomes. bioRxiv
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
September, 2017
152017
Using 1ng of DNA to detect haplotype phasing and gene fusions from whole exome sequencing of cancer cell lines
M Jarosz, M Schnall-Levin, GXY Zheng, P Marks, ...
Cancer Research 75 (15 Supplement), 4742-4742, 2015
92015
Systems and methods for determining the integrity of test strings with respect to a reference genome
S Kyriazopoulou-Panagiotopoulou, P Marks
US Patent 10,366,777, 2019
12019
Deep Learning-Based Aberrant Splicing Detection
K Jaganathan, F Kai-How, SK PANAGIOTOPOULOU, JF McRAE
US Patent App. 16/160,980, 2019
12019
Control variates as screening functions
S Kyriazopoulou-Panagiotopoulou, I Kontoyiannis, SP Meyn
Proceedings of the 3rd International Conference on Performance Evaluation …, 2008
12008
Systems and methods for determining the integrity of test strings with respect to a ground truth string
S Kyriazopoulou-Panagiotopoulou, P Marks
US Patent 10,748,643, 2020
2020
Deep Learning-Based Pathogenicity Classifier for Promoter Single Nucleotide Variants (pSNVs)
SK PANAGIOTOPOULOU, F Kai-How
US Patent App. 16/578,210, 2020
2020
Aberrant Splicing Detection Using Convolutional Neural Networks (CNNs)
K Jaganathan, F Kai-How, SK PANAGIOTOPOULOU, JF McRAE
US Patent App. 16/160,984, 2019
2019
Deep Learning-Based Splice Site Classification
K Jaganathan, F Kai-How, SK PANAGIOTOPOULOU, JF McRAE
US Patent App. 16/160,978, 2019
2019
Linked-Reads enable detailed, phased resolution of structural variation in the cancer genome
S Kyriazopoulou-Panagiotopoulou, P Marks, H Heaton, H Ordonez, ...
Cancer Research 76 (14 Supplement), 3602-3602, 2016
2016
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