Sofia Kyriazopoulou-Panagiotopoulou
Sofia Kyriazopoulou-Panagiotopoulou
Illumina, 10x Genomics, Stanford University Department of Computer Science
Verified email at alumni.stanford.edu
TitleCited byYear
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
88292012
Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
GXY Zheng, BT Lau, M Schnall-Levin, M Jarosz, JM Bell, CM Hindson, ...
Nature biotechnology 34 (3), 303, 2016
3022016
Extensive variation in chromatin states across humans
M Kasowski, S Kyriazopoulou-Panagiotopoulou, F Grubert, JB Zaugg, ...
Science 342 (6159), 750-752, 2013
2722013
Extensive sequencing of seven human genomes to characterize benchmark reference materials
JM Zook, D Catoe, J McDaniel, L Vang, N Spies, A Sidow, Z Weng, Y Liu, ...
Scientific data 3, 160025, 2016
2212016
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
A Kundaje, S Kyriazopoulou-Panagiotopoulou, M Libbrecht, CL Smith, ...
Genome research 22 (9), 1735-1747, 2012
1422012
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10, 2019
412019
Predicting splicing from primary sequence with deep learning
K Jaganathan, SK Panagiotopoulou, JF McRae, SF Darbandi, D Knowles, ...
Cell 176 (3), 535-548. e24, 2019
222019
Reconstruction of genealogical relationships with applications to Phase III of HapMap
S Kyriazopoulou-Panagiotopoulou, D Kashef Haghighi, SJ Aerni, ...
Bioinformatics 27 (13), i333-i341, 2011
202011
Resolving the full spectrum of human genome variation using Linked-Reads
P Marks, S Garcia, AM Barrio, K Belhocine, J Bernate, R Bharadwaj, ...
Genome research 29 (4), 635-645, 2019
172019
Multi-platform discovery of haplotype-resolved structural variation in human genomes. bioRxiv
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
September, 2017
142017
Systems and methods for determining structural variation and phasing using variant call data
S Kyriazopoulou-Panagiotopoulou, P Marks, M Schnall-Levin, X Zheng, ...
US Patent App. 15/019,928, 2016
132016
Control variates as screening functions
S Kyriazopoulou-Panagiotopoulou, I Kontoyiannis, SP Meyn
Proceedings of the 3rd International Conference on Performance Evaluation …, 2008
12008
Aberrant Splicing Detection Using Convolutional Neural Networks (CNNs)
K Jaganathan, F Kai-How, SK PANAGIOTOPOULOU, JF McRAE
US Patent App. 16/160,984, 2019
2019
Deep Learning-Based Splice Site Classification
K Jaganathan, F Kai-How, SK PANAGIOTOPOULOU, JF McRAE
US Patent App. 16/160,978, 2019
2019
Deep Learning-Based Aberrant Splicing Detection
K Jaganathan, F Kai-How, SK PANAGIOTOPOULOU, JF McRAE
US Patent App. 16/160,980, 2019
2019
Systems and methods for determining the integrity of test strings with respect to a ground truth string
S Kyriazopoulou-Panagiotopoulou, P Marks
US Patent App. 15/692,316, 2019
2019
Systems and methods for determining the integrity of test strings with respect to a reference genome
S Kyriazopoulou-Panagiotopoulou, P Marks
US Patent App. 15/842,647, 2019
2019
Linked-Reads enable detailed, phased resolution of structural variation in the cancer genome
S Kyriazopoulou-Panagiotopoulou, P Marks, H Heaton, H Ordonez, ...
Cancer Research 76 (14 Supplement), 3602-3602, 2016
2016
Molecular Cytogenetics Using Linked-Reads
DM Church, C Jabara, S Kyriazopoulou-Panagiotopoulou, R Collins, ...
Cancer Genetics 209 (6), 297, 2016
2016
Using 1ng of DNA to detect haplotype phasing and gene fusions from whole exome sequencing of cancer cell lines
M Jarosz, M Schnall-Levin, GXY Zheng, P Marks, ...
Cancer Research 75 (15 Supplement), 4742-4742, 2015
2015
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