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David L. Dotson
David L. Dotson
Datryllic LLC
Verified email at datryllic.com - Homepage
Title
Cited by
Cited by
Year
MDAnalysis: a Python package for the rapid analysis of molecular dynamics simulations
RJ Gowers, M Linke, J Barnoud, TJE Reddy, MN Melo, SL Seyler, ...
Los Alamos National lab.(LANL), Los Alamos, NM (United States), 2019
10972019
A two-domain elevator mechanism for sodium/proton antiport
C Lee, HJ Kang, C Von Ballmoos, S Newstead, P Uzdavinys, DL Dotson, ...
Nature 501 (7468), 573-577, 2013
2552013
SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids
J Jansen, KC Reimer, JS Nagai, FS Varghese, GJ Overheul, M de Beer, ...
Cell Stem Cell 29 (2), 217-231. e8, 2022
1682022
Mechanism of pH-dependent activation of the sodium-proton antiporter NhaA
Y Huang, W Chen, DL Dotson, O Beckstein, J Shen
Nature communications 7 (1), 12940, 2016
972016
Crystal structure of the sodium–proton antiporter NhaA dimer and new mechanistic insights
C Lee, S Yashiro, DL Dotson, P Uzdavinys, S Iwata, MSP Sansom, ...
Journal of General Physiology 144 (6), 529-544, 2014
962014
Crystal structures reveal the molecular basis of ion translocation in sodium/proton antiporters
M Coincon, P Uzdavinys, E Nji, DL Dotson, I Winkelmann, ...
Nature structural & molecular biology 23 (3), 248-255, 2016
892016
Proceedings of the 15th python in science conference
RJ Gowers, M Linke, J Barnoud, TJE Reddy, MN Melo, SL Seyler, ...
Austin, TX, 2016
562016
Spice, a dataset of drug-like molecules and peptides for training machine learning potentials
P Eastman, PK Behara, DL Dotson, R Galvelis, JE Herr, JT Horton, Y Mao, ...
Scientific Data 10 (1), 11, 2023
412023
Development and benchmarking of open force field 2.0. 0: the Sage small molecule force field
S Boothroyd, PK Behara, OC Madin, DF Hahn, H Jang, V Gapsys, ...
Journal of chemical theory and computation 19 (11), 3251-3275, 2023
372023
Open Science Discovery of Potent Non-Covalent SARS-CoV-2 Main Protease Inhibitors
COVID Moonshot Consortium, H Achdout, A Aimon, DS Alonzi, R Arbon, ...
BioRxiv, 2020.10. 29.339317, 2020
362020
Quantum chemistry common driver and databases (QCDB) and quantum chemistry engine (QCEngine): Automation and interoperability among computational chemistry programs
DGA Smith, AT Lolinco, ZL Glick, J Lee, A Alenaizan, TA Barnes, ...
The Journal of chemical physics 155 (20), 2021
262021
Open science discovery of potent noncovalent SARS-CoV-2 main protease inhibitors
ML Boby, D Fearon, M Ferla, M Filep, L Koekemoer, MC Robinson, ...
Science 382 (6671), eabo7201, 2023
212023
MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations, 2016
RJ Gowers, M Linke, J Barnoud, T Reddy, M Melo, S Seyler, J Domański, ...
Los Alamos National Lab.(LANL), Los Alamos, NM (United States), 2020
202020
Open force field BespokeFit: automating bespoke torsion parametrization at scale
JT Horton, S Boothroyd, J Wagner, JA Mitchell, T Gokey, DL Dotson, ...
Journal of chemical information and modeling 62 (22), 5622-5633, 2022
162022
MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations. Austin, Texas; 2016
R Gowers, M Linke, J Barnoud, T Reddy, M Melo, S Seyler, J Domański, ...
There is no corresponding record for this reference, 98-105, 0
11
datreant: persistent, Pythonic trees for heterogeneous data.
DL Dotson, SL Seyler, M Linke, RJ Gowers, O Beckstein
SciPy, 51-56, 2016
102016
Collaborative assessment of molecular geometries and energies from the Open Force Field
L D’Amore, DF Hahn, DL Dotson, JT Horton, J Anwar, I Craig, T Fox, ...
Journal of chemical information and modeling 62 (23), 6094-6104, 2022
82022
The climber-tether interface of the space elevator
DH Wright, L Bartoszek, AJ Burke, D Dotson, H El Chab, J Knapman, ...
ISEC Study Report, www. lulu. com, 2023
42023
Tuning Potential Functions to Host–Guest Binding Data
J Setiadi, S Boothroyd, DR Slochower, DL Dotson, MW Thompson, ...
Journal of Chemical Theory and Computation 20 (1), 239-252, 2023
22023
Climate action and growing electricity demand: Meeting both challenges in the 21st century with space-based solar power delivered by space elevator
DL Dotson, J Eddy, P Swan
Acta Astronautica 198, 761-766, 2022
22022
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Articles 1–20