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Huaxu Yu
Huaxu Yu
Postdoc at UC Davis
Verified email at ucdavis.edu
Title
Cited by
Cited by
Year
ISFrag: de novo recognition of in-Source fragments for liquid chromatography–mass spectrometry data
J Guo, S Shen, S Xing, H Yu, T Huan
Analytical Chemistry 93 (29), 10243-10250, 2021
292021
Fold-change compression: an unexplored but correctable quantitative bias caused by nonlinear electrospray ionization responses in untargeted metabolomics
H Yu, S Xing, L Nierves, PF Lange, T Huan
Analytical chemistry 92 (10), 7011-7019, 2020
282020
EVA: evaluation of metabolic feature fidelity using a deep learning model trained with over 25000 extracted ion chromatograms
J Guo, S Shen, S Xing, Y Chen, F Chen, EM Porter, H Yu, T Huan
Analytical Chemistry 93 (36), 12181-12186, 2021
262021
Global-scale metabolomic profiling of human hair for simultaneous monitoring of endogenous metabolome, short-and long-term exposome
Y Chen, J Guo, S Xing, H Yu, T Huan
Frontiers in Chemistry 9, 674265, 2021
222021
Parallel metabolomics and lipidomics enables the comprehensive study of mouse brain regional metabolite and lipid patterns
H Yu, N Villanueva, T Bittar, E Arsenault, B Labonté, T Huan
Analytica chimica acta 1136, 168-177, 2020
192020
Addressing big data challenges in mass spectrometry-based metabolomics
J Guo, H Yu, S Xing, T Huan
Chemical Communications 58 (72), 9979-9990, 2022
162022
Computational variation: an underinvestigated quantitative variability caused by automated data processing in untargeted metabolomics
H Yu, Y Chen, T Huan
Analytical Chemistry 93 (25), 8719-8728, 2021
152021
Recognizing contamination fragment ions in liquid chromatography–tandem mass spectrometry data
S Xing, H Yu, M Liu, Q Jia, Z Sun, M Fang, T Huan
Journal of the American Society for Mass Spectrometry 32 (9), 2296-2305, 2021
152021
Patterned signal ratio biases in mass spectrometry-based quantitative metabolomics
H Yu, T Huan
Analytical chemistry 93 (4), 2254-2262, 2021
152021
Comprehensive assessment of the diminished statistical power caused by nonlinear electrospray ionization responses in mass spectrometry-based metabolomics
H Yu, T Huan
Analytica chimica acta 1200, 339614, 2022
122022
MAFFIN: metabolomics sample normalization using maximal density fold change with high-quality metabolic features and corrected signal intensities
H Yu, T Huan
Bioinformatics 38 (13), 3429-3437, 2022
92022
Adaptive box–cox transformation: A highly flexible feature-specific data transformation to improve metabolomic data normality for better statistical analysis
H Yu, P Sang, T Huan
Analytical Chemistry 94 (23), 8267-8276, 2022
92022
Quantitative challenges and their bioinformatic solutions in mass spectrometry-based metabolomics
H Yu, B Low, Z Zhang, J Guo, T Huan
TrAC Trends in Analytical Chemistry 161, 117009, 2023
82023
JPA: joint metabolic feature extraction increases the depth of chemical coverage for LC-MS-Based metabolomics and exposomics
J Guo, S Shen, M Liu, C Wang, B Low, Y Chen, Y Hu, S Xing, H Yu, Y Gao, ...
Metabolites 12 (3), 212, 2022
82022
Lymphatic endothelial-like cells promote glioblastoma stem cell growth through cytokine-driven cholesterol metabolism
L Zhao, Z Qiu, Z Yang, L Xu, TM Pearce, Q Wu, K Yang, FL Li, O Saulnier, ...
Nature Cancer, 1-20, 2024
32024
De Novo Cleaning of Chimeric MS/MS Spectra for LC-MS/MS-Based Metabolomics
T Zhao, S Xing, H Yu, T Huan
Analytical Chemistry 95 (35), 13018-13028, 2023
12023
Capture of Endogenous Lipids in Peptidiscs and Effect on Protein Stability and Activity
RS Jandu, H Yu, Z Zhao, HT Le, S Kim, T Huan, FD van Hoa
iScience, 2024
2024
Reducing Quantitative Uncertainty Caused by Data Processing in Untargeted Metabolomics
Z Zhang, H Yu, E Wong-Ma, P Dokouhaki, A Mostafa, JS Shavadia, F Wu, ...
Analytical Chemistry, 2024
2024
ChloroDBPFinder: Machine Learning-Guided Recognition of Chlorinated Disinfection Byproducts from Nontargeted LC-HRMS Analysis
T Zhao, NJP Wawryk, S Xing, B Low, G Li, H Yu, Y Wang, Q Shen, XF Li, ...
Analytical Chemistry, 2024
2024
Bayesian optimization of separation gradients to maximize the performance of untargeted LC-MS
H Yu, P Biswas, E Rideout, Y Cao, T Huan
bioRxiv, 2023.09. 08.556930, 2023
2023
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Articles 1–20