| Fundamentals of microbial community resistance and resilience A Shade, H Peter, SD Allison, DL Baho, M Berga, H Bürgmann, DH Huber, ... Frontiers in Microbiology 3, 2012 | 553 | 2012 |
| Beyond the Venn diagram: the hunt for a core microbiome A Shade, J Handelsman Environmental Microbiology 14 (1), 4-12, 2012 | 390 | 2012 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457, 2017 | 366 | 2017 |
| Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project JA Gilbert, F Meyer, D Antonopoulos, P Balaji, CT Brown, CT Brown, ... Standards in genomic sciences 3 (3), 243, 2010 | 222 | 2010 |
| A meta-analysis of changes in bacterial and archaeal communities with time A Shade, JG Caporaso, J Handelsman, R Knight, N Fierer The ISME journal 7 (8), 1493-1506, 2013 | 209 | 2013 |
| Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity A Shade, SE Jones, JG Caporaso, J Handelsman, R Knight, N Fierer, ... mBio 5 (4), e01371-14, 2014 | 187 | 2014 |
| Controls on soil microbial community stability under climate change FT De Vries, A Shade Frontiers in Microbiology 4, 265, 2013 | 156 | 2013 |
| Interannual dynamics and phenology of bacterial communities in a eutrophic lake A Shade, AD Kent, SE Jones, RJ Newton, EW Triplett, KD McMahon Limnology and Oceanography 52 (2), 487-494, 2007 | 143 | 2007 |
| Culturing captures members of the soil rare biosphere A Shade, CS Hogan, AK Klimowicz, M Linske, PS McManus, ... Environmental Microbiology 14 (9), 2247-2252, 2012 | 131 | 2012 |
| Lake microbial communities are resilient after a whole-ecosystem disturbance A Shade, JS Read, ND Youngblut, N Fierer, R Knight, TK Kratz, NR Lottig, ... The ISME journal 6 (12), 2153-2167, 2012 | 109 | 2012 |
| The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics A Shade, SE Jones, KD McMahon Environmental microbiology 10 (4), 1057-1067, 2008 | 102 | 2008 |
| Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ... The ISME journal 10 (7), 1589-1601, 2016 | 92 | 2016 |
| Unexpected diversity during community succession in the apple flower microbiome A Shade, PS McManus, J Handelsman MBio 4 (2), e00602-12, 2013 | 90 | 2013 |
| Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance A Shade, JS Read, DG Welkie, TK Kratz, CH Wu, KD McMahon Environmental microbiology 13 (10), 2752-2767, 2011 | 83 | 2011 |
| Diversity is the question, not the answer A Shade The ISME Journal 11 (1), 1-6, 2017 | 81 | 2017 |
| The under-ice microbiome of seasonally frozen lakes S Bertilsson, A Burgin, CC Carey, SB Fey, HP Grossart, LM Grubisic, ... Limnology and Oceanography 58 (6), 1998-2012, 2013 | 81 | 2013 |
| Bridging the gap between micro-and macro-scale perspectives on the role of microbial communities in global change ecology TC Balser, KD McMahon, D Bart, D Bronson, DR Coyle, N Craig, ... Plant and Soil 289 (1), 59-70, 2006 | 80 | 2006 |
| Our microbial selves: what ecology can teach us A Gonzalez, JC Clemente, A Shade, JL Metcalf, S Song, B Prithiviraj, ... EMBO reports 12 (8), 775-784, 2011 | 79 | 2011 |
| Characterizing microbial communities through space and time A Gonzalez, A King, MS Robeson II, S Song, A Shade, JL Metcalf, ... Current opinion in biotechnology 23 (3), 431-436, 2012 | 78 | 2012 |
| Comparison of primer sets for use in automated ribosomal intergenic spacer analysis of aquatic bacterial communities: an ecological perspective SE Jones, AL Shade, KD McMahon, AD Kent Applied and environmental microbiology 73 (2), 659-662, 2007 | 69 | 2007 |