Ashley Shade
TitleCited byYear
Fundamentals of microbial community resistance and resilience
A Shade, H Peter, SD Allison, DL Baho, M Berga, H Bürgmann, DH Huber, ...
Frontiers in Microbiology 3, 2012
5532012
Beyond the Venn diagram: the hunt for a core microbiome
A Shade, J Handelsman
Environmental Microbiology 14 (1), 4-12, 2012
3902012
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457, 2017
3662017
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project
JA Gilbert, F Meyer, D Antonopoulos, P Balaji, CT Brown, CT Brown, ...
Standards in genomic sciences 3 (3), 243, 2010
2222010
A meta-analysis of changes in bacterial and archaeal communities with time
A Shade, JG Caporaso, J Handelsman, R Knight, N Fierer
The ISME journal 7 (8), 1493-1506, 2013
2092013
Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity
A Shade, SE Jones, JG Caporaso, J Handelsman, R Knight, N Fierer, ...
mBio 5 (4), e01371-14, 2014
1872014
Controls on soil microbial community stability under climate change
FT De Vries, A Shade
Frontiers in Microbiology 4, 265, 2013
1562013
Interannual dynamics and phenology of bacterial communities in a eutrophic lake
A Shade, AD Kent, SE Jones, RJ Newton, EW Triplett, KD McMahon
Limnology and Oceanography 52 (2), 487-494, 2007
1432007
Culturing captures members of the soil rare biosphere
A Shade, CS Hogan, AK Klimowicz, M Linske, PS McManus, ...
Environmental Microbiology 14 (9), 2247-2252, 2012
1312012
Lake microbial communities are resilient after a whole-ecosystem disturbance
A Shade, JS Read, ND Youngblut, N Fierer, R Knight, TK Kratz, NR Lottig, ...
The ISME journal 6 (12), 2153-2167, 2012
1092012
The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics
A Shade, SE Jones, KD McMahon
Environmental microbiology 10 (4), 1057-1067, 2008
1022008
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ...
The ISME journal 10 (7), 1589-1601, 2016
922016
Unexpected diversity during community succession in the apple flower microbiome
A Shade, PS McManus, J Handelsman
MBio 4 (2), e00602-12, 2013
902013
Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance
A Shade, JS Read, DG Welkie, TK Kratz, CH Wu, KD McMahon
Environmental microbiology 13 (10), 2752-2767, 2011
832011
Diversity is the question, not the answer
A Shade
The ISME Journal 11 (1), 1-6, 2017
812017
The under-ice microbiome of seasonally frozen lakes
S Bertilsson, A Burgin, CC Carey, SB Fey, HP Grossart, LM Grubisic, ...
Limnology and Oceanography 58 (6), 1998-2012, 2013
812013
Bridging the gap between micro-and macro-scale perspectives on the role of microbial communities in global change ecology
TC Balser, KD McMahon, D Bart, D Bronson, DR Coyle, N Craig, ...
Plant and Soil 289 (1), 59-70, 2006
802006
Our microbial selves: what ecology can teach us
A Gonzalez, JC Clemente, A Shade, JL Metcalf, S Song, B Prithiviraj, ...
EMBO reports 12 (8), 775-784, 2011
792011
Characterizing microbial communities through space and time
A Gonzalez, A King, MS Robeson II, S Song, A Shade, JL Metcalf, ...
Current opinion in biotechnology 23 (3), 431-436, 2012
782012
Comparison of primer sets for use in automated ribosomal intergenic spacer analysis of aquatic bacterial communities: an ecological perspective
SE Jones, AL Shade, KD McMahon, AD Kent
Applied and environmental microbiology 73 (2), 659-662, 2007
692007
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Articles 1–20