| Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient-and sequence-level meta-analysis SY Rhee, JL Blanco, MR Jordan, J Taylor, P Lemey, V Varghese, ... PLoS Med 12 (4), e1001810, 2015 | 227 | 2015 |
| Automated analysis of phylogenetic clusters M Ragonnet-Cronin, E Hodcroft, S Hué, E Fearnhill, V Delpech, ... BMC bioinformatics 14 (1), 1-10, 2013 | 210 | 2013 |
| Evaluating the effects of SARS-CoV-2 Spike mutation D614G on transmissibility and pathogenicity E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ... Cell 184 (1), 64-75. e11, 2021 | 95 | 2021 |
| HIV-1 modulates the tRNA pool to improve translation efficiency A Van Weringh, M Ragonnet-Cronin, E Pranckeviciene, M Pavon-Eternod, ... Molecular biology and evolution 28 (6), 1827-1834, 2011 | 86 | 2011 |
| Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions S Hué, AE Brown, M Ragonnet-Cronin, SJ Lycett, DT Dunn, E Fearnhill, ... Aids 28 (13), 1967-1975, 2014 | 67 | 2014 |
| Transmission of SARS-CoV-2 Lineage B. 1.1. 7 in England: Insights from linking epidemiological and genetic data E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ... medRxiv, 2020.12. 30.20249034, 2021 | 52 | 2021 |
| Genetic diversity as a marker for timing infection in HIV-infected patients: evaluation of a 6-month window and comparison with BED M Ragonnet-Cronin, S Aris-Brosou, I Joanisse, H Merks, D Vallée, ... The Journal of infectious diseases 206 (5), 756-764, 2012 | 51 | 2012 |
| Identifying transmission clusters with cluster picker and HIV-TRACE R Rose, SL Lamers, JJ Dollar, MK Grabowski, EB Hodcroft, ... AIDS research and human retroviruses 33 (3), 211-218, 2017 | 50 | 2017 |
| Longitudinal phylogenetic surveillance identifies distinct patterns of cluster dynamics M Ragonnet-Cronin, M Ofner-Agostini, H Merks, R Pilon, M Rekart, ... JAIDS Journal of Acquired Immune Deficiency Syndromes 55 (1), 102-108, 2010 | 46 | 2010 |
| Transmission of non-B HIV subtypes in the United Kingdom is increasingly driven by large non-heterosexual transmission clusters M Ragonnet-Cronin, SJ Lycett, EB Hodcroft, S Hué, E Fearnhill, AE Brown, ... The Journal of infectious diseases 213 (9), 1410-1418, 2016 | 45* | 2016 |
| Recent and rapid transmission of HIV among people who inject drugs in Scotland revealed through phylogenetic analysis M Ragonnet-Cronin, C Jackson, A Bradley-Stewart, C Aitken, A McAuley, ... The Journal of infectious diseases 217 (12), 1875-1882, 2018 | 40 | 2018 |
| HIV transmission networks among transgender women in Los Angeles County, CA, USA: a phylogenetic analysis of surveillance data M Ragonnet-Cronin, YW Hu, SR Morris, Z Sheng, K Poortinga, ... The Lancet HIV 6 (3), e164-e172, 2019 | 37 | 2019 |
| Comparison of molecular testing strategies for COVID-19 control: a mathematical modelling study NC Grassly, M Pons-Salort, EPK Parker, PJ White, NM Ferguson, ... The Lancet Infectious Diseases 20 (12), 1381-1389, 2020 | 32 | 2020 |
| Analysis of the history and spread of HIV-1 in Uganda using phylodynamics G Yebra, M Ragonnet-Cronin, D Ssemwanga, CM Parry, CH Logue, ... The Journal of general virology 96 (Pt 7), 1890, 2015 | 32 | 2015 |
| Non-disclosed men who have sex with men in UK HIV transmission networks: phylogenetic analysis of surveillance data M Ragonnet-Cronin, S Hué, EB Hodcroft, A Tostevin, D Dunn, T Fawcett, ... The lancet HIV 5 (6), e309-e316, 2018 | 27 | 2018 |
| Report 16: Role of testing in COVID-19 control N Grassly, M Pons Salort, E Parker, P White, K Ainslie, M Baguelin, ... | 23 | 2020 |
| FAVITES: simultaneous simulation of transmission networks, phylogenetic trees, and sequences N Moshiri, M Ragonnet-Cronin, J Wertheim, S Mirarab Bioinformatics, 2018 | 23 | 2018 |
| Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City region MT Maurano, S Ramaswami, P Zappile, D Dimartino, L Boytard, ... Genome research 30 (12), 1781-1788, 2020 | 22 | 2020 |
| Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic G Yebra, EB Hodcroft, ML Ragonnet-Cronin, D Pillay, AJL Brown, ... Scientific reports 6 (1), 1-6, 2016 | 22 | 2016 |
| Reduction in mobility and COVID-19 transmission P Nouvellet, S Bhatia, A Cori, KEC Ainslie, M Baguelin, S Bhatt, ... Nature Communications 12 (1), 1-9, 2021 | 21 | 2021 |
Emma B HodcroftPost-doctoral Researcher, University of BernVerified email at unibas.ch
