Timothy G Vaughan
Timothy G Vaughan
Department of Biosystems Science and Engineering, ETH Zürich, Switzerland
Verified email at bsse.ethz.ch
Title
Cited by
Cited by
Year
BEAST 2: a software platform for Bayesian evolutionary analysis
R Bouckaert, J Heled, D Kühnert, T Vaughan, CH Wu, D Xie, MA Suchard, ...
PLoS Comput Biol 10 (4), e1003537, 2014
40522014
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
5922019
A Bayesian model predicts the response of axons to molecular gradients
D Mortimer, J Feldner, T Vaughan, I Vetter, Z Pujic, WJ Rosoff, K Burrage, ...
Proceedings of the National Academy of Sciences 106 (25), 10296-10301, 2009
1082009
Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth–death SIR model
D Kühnert, T Stadler, TG Vaughan, AJ Drummond
Journal of the Royal Society Interface 11 (94), 20131106, 2014
1012014
Efficient Bayesian inference under the structured coalescent
TG Vaughan, D Kühnert, A Popinga, D Welch, AJ Drummond
Bioinformatics 30 (16), 2272-2279, 2014
902014
Einstein-Podolsky-Rosen entanglement strategies in two-well Bose-Einstein condensates
QY He, MD Reid, TG Vaughan, C Gross, M Oberthaler, PD Drummond
Physical review letters 106 (12), 120405, 2011
882011
Axon guidance by growth-rate modulation
D Mortimer, Z Pujic, T Vaughan, AW Thompson, J Feldner, I Vetter, ...
Proceedings of the National Academy of Sciences 107 (11), 5202-5207, 2010
722010
Phylodynamics with migration: a computational framework to quantify population structure from genomic data
D Kühnert, T Stadler, TG Vaughan, AJ Drummond
Molecular biology and evolution 33 (8), 2102-2116, 2016
692016
Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020
EB Hodcroft, M Zuber, S Nadeau, KHD Crawford, JD Bloom, D Veesler, ...
MedRxiv, 2020
592020
A stochastic simulator of birth–death master equations with application to phylodynamics
TG Vaughan, AJ Drummond
Molecular biology and evolution 30 (6), 1480-1493, 2013
482013
IcyTree: rapid browser-based visualization for phylogenetic trees and networks
TG Vaughan
Bioinformatics 33 (15), 2392-2394, 2017
422017
Reproductive number of the COVID-19 epidemic in Switzerland with a focus on the Cantons of Basel-Stadt and Basel-Landschaft
J Scire, SA Nadeau, TG Vaughan, B Gavin, S Fuchs, J Sommer, KN Koch, ...
Swiss medical weekly 150 (19-20), w20271, 2020
412020
Taming the BEAST—A community teaching material resource for BEAST 2
J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ...
Systematic biology 67 (1), 170-174, 2018
392018
Entanglement, number fluctuations and optimized interferometric phase measurement
QY He, TG Vaughan, PD Drummond, MD Reid
New Journal of Physics 14 (9), 093012, 2012
322012
Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial
C Pacioni, H Hunt, ME Allentoft, TG Vaughan, AF Wayne, A Baynes, ...
Molecular Ecology 24 (23), 5813-5828, 2015
302015
How well can the exponential-growth coalescent approximate constant-rate birth–death population dynamics?
T Stadler, TG Vaughan, A Gavryushkin, S Guindon, D Kühnert, ...
Proceedings of the Royal Society B: Biological Sciences 282 (1806), 20150420, 2015
302015
Extinction times in autocatalytic systems
PD Drummond, TG Vaughan, AJ Drummond
The Journal of Physical Chemistry A 114 (39), 10481-10491, 2010
252010
Inferring ancestral recombination graphs from bacterial genomic data
TG Vaughan, D Welch, AJ Drummond, PJ Biggs, T George, NP French
Genetics 205 (2), 857-870, 2017
242017
Molecular Approaches to Understanding Transmission and Source Attribution in Nontyphoidal Salmonella and Their Application in Africa
AE Mather, TG Vaughan, NP French
Clinical Infectious Diseases 61 (suppl_4), S259-S265, 2015
242015
Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models
A Popinga, T Vaughan, T Stadler, AJ Drummond
Genetics 199 (2), 595-607, 2015
232015
The system can't perform the operation now. Try again later.
Articles 1–20