Bart Mesuere
Bart Mesuere
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Unipept: tryptic peptide-based biodiversity analysis of metaproteome samples
B Mesuere, B Devreese, G Debyser, M Aerts, P Vandamme, P Dawyndt
Journal of proteome research 11 (12), 5773-5780, 2012
Unipept 4.0: functional analysis of metaproteome data
R Gurdeep Singh, A Tanca, A Palomba, F Van der Jeugt, P Verschaffelt, ...
Journal of proteome research 18 (2), 606-615, 2019
The Unipept Metaproteomics Analysis Pipeline
B Mesuere, G Debyser, M Aerts, B Devreese, P Vandamme, P Dawyndt
Proteomics 15 (8), 1437–1442, 2015
Faecal proteomics: a tool to investigate dysbiosis and inflammation in patients with cystic fibrosis
G Debyser, B Mesuere, L Clement, J Van de Weygaert, P Van Hecke, ...
Journal of Cystic Fibrosis 15 (2), 242-250, 2016
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows
T Van Den Bossche, BJ Kunath, K Schallert, SS Schäpe, PE Abraham, ...
Nature communications 12 (1), 7305, 2021
High-throughput metaproteomics data analysis with Unipept: a tutorial
B Mesuere, F Van der Jeugt, T Willems, T Naessens, B Devreese, ...
Journal of proteomics 171, 11-22, 2018
Unipept web services for metaproteomics analysis
B Mesuere, T Willems, F Van der Jeugt, B Devreese, P Vandamme, ...
Bioinformatics 32 (11), 1746-1748, 2016
Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome
C De Tender, B Mesuere, F Van der Jeugt, A Haegeman, T Ruttink, ...
Scientific Reports 9 (1), 9890, 2019
Application of MALDI-TOF mass spectrometry for the detection of enterotoxins produced by pathogenic strains of the Bacillus cereus group
V Tsilia, B Devreese, I de Baenst, B Mesuere, A Rajkovic, M Uyttendaele, ...
Analytical and Bioanalytical Chemistry, 1-12, 2012
Disseminating metaproteomic informatics capabilities and knowledge using the Galaxy-P framework
C Blank, C Easterly, B Gruening, J Johnson, CA Kolmeder, P Kumar, ...
Proteomes 6 (1), 7, 2018
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes
T Van Den Bossche, MØ Arntzen, D Becher, D Benndorf, VGH Eijsink, ...
Microbiome 9 (1), 243, 2021
Survey of metaproteomics software tools for functional microbiome analysis
R Sajulga, C Easterly, M Riffle, B Mesuere, T Muth, S Mehta, P Kumar, ...
PLoS One 15 (11), e0241503, 2020
metaQuantome: an integrated, quantitative metaproteomics approach reveals connections between taxonomy and protein function in complex microbiomes
CW Easterly, R Sajulga, S Mehta, J Johnson, P Kumar, S Hubler, ...
Molecular & Cellular Proteomics 18 (8), S82-S91, 2019
The unique peptidome: Taxon-specific tryptic peptides as biomarkers for targeted metaproteomics
B Mesuere, F Van der Jeugt, B Devreese, P Vandamme, P Dawyndt
Proteomics 16 (17), 2303-2432, 2016
Unipept Desktop: A Faster, More Powerful Metaproteomics Results Analysis Tool
P Verschaffelt, T Van Den Bossche, L Martens, P Dawyndt, B Mesuere
Journal of Proteome Research 20 (4), 2005-2009, 2021
Dolos: Language‐agnostic plagiarism detection in source code
R Maertens, C Van Petegem, N Strijbol, T Baeyens, AC Jacobs, ...
Journal of Computer Assisted Learning 38 (4), 1046-1061, 2022
Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis
T Van Den Bossche, P Verschaffelt, K Schallert, H Barsnes, P Dawyndt, ...
Journal of proteome research 19 (8), 3562-3566, 2020
Pout2Prot: An Efficient Tool to Create Protein (Sub)groups from Percolator Output Files
K Schallert, P Verschaffelt, B Mesuere, D Benndorf, L Martens, ...
Journal of Proteome Research 21 (4), 1175-1180, 2022
MegaGO: a fast yet powerful approach to assess functional gene ontology similarity across meta-omics data sets
P Verschaffelt, T Van Den Bossche, W Gabriel, M Burdukiewicz, A Soggiu, ...
Journal of Proteome Research 20 (4), 2083-2088, 2021
FragGeneScanRs: faster gene prediction for short reads
F Van der Jeugt, P Dawyndt, B Mesuere
BMC bioinformatics 23 (1), 198, 2022
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