| Bubble column reactors N Kantarci, F Borak, KO Ulgen Process biochemistry 40 (7), 2263-2283, 2005 | 768 | 2005 |
| The stability of enzymes after sonication B Özbek, KÖ Ülgen Process Biochemistry 35 (9), 1037-1043, 2000 | 162 | 2000 |
| Integration of metabolome data with metabolic networks reveals reporter reactions T Cakir, KR Patil, ZI Önsan, KÖ Ülgen, B Kirdar, J Nielsen Molecular systems biology 2 (1), 2006 | 149 | 2006 |
| Mathematical description of ethanol fermentation by immobilised Saccharomyces cerevisiae G Birol, P Doruker, B Kirdar, Zİ Önsan, K Ülgen Process Biochemistry 33 (7), 763-771, 1998 | 104 | 1998 |
| Improvement of ethanol production from starch by recombinant yeast through manipulation of environmental factors MM Altıntaş, KÖ Ülgen, B Kırdar, ZI Önsan, SG Oliver Enzyme and microbial technology 31 (5), 640-647, 2002 | 83 | 2002 |
| Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia T Çakιr, S Alsan, H Saybaşιlι, A Akιn, KÖ Ülgen Theoretical Biology and Medical Modelling 4 (1), 48, 2007 | 82 | 2007 |
| Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks T Çakir, B Kirdar, KÖ Ülgen Biotechnology and Bioengineering 86 (3), 251-260, 2004 | 76 | 2004 |
| PHISTO: pathogen–host interaction search tool S Durmuş Tekir, T Çakır, E Ardıç, AS Sayılırbaş, G Konuk, M Konuk, ... Bioinformatics 29 (10), 1357-1358, 2013 | 66 | 2013 |
| Bioconversion of starch into ethanol by a recombinant Saccharomyces cerevisiae strain YPG-AB KÖ Ülgen, B Saygılı, Zİ Önsan, B Kırdar Process biochemistry 37 (10), 1157-1168, 2002 | 65 | 2002 |
| Infection Strategies of Bacterial and Viral Pathogens through Pathogen-Human Protein-Protein Interactions S Durmus Tekir, T Cakir, KO Ulgen Frontiers in Microbial Immunology: Systems Biology of Microbial Infection, 2012 | 54 | 2012 |
| Metabolic pathway analysis of enzyme-deficient human red blood cells T Çakır, CS Tacer, KÖ Ülgen Biosystems 78 (1-3), 49-67, 2004 | 48 | 2004 |
| Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae Ç Tunahan, K Betül, ÖZ İlsen, Ü Kutlu, N Jens BMC Systems Biology 1, DOI10.1186/1752-0509-1-18, 2007 | 42* | 2007 |
| Integrative investigation of metabolic and transcriptomic data P Pir, B Kırdar, A Hayes, Zİ Önsan, KÖ Ülgen, SG Oliver BMC bioinformatics 7 (1), 203, 2006 | 38 | 2006 |
| Molecular facets of sphingolipids: mediators of diseases FBK Ozbayraktar, KO Ulgen Biotechnology Journal: Healthcare Nutrition Technology 4 (7), 1028-1041, 2009 | 34 | 2009 |
| Systematic analysis of transcription-level effects of neurodegenerative diseases on human brain metabolism by a newly reconstructed brain-specific metabolic network M Sertbaş, K Ülgen, T Çakır FEBS open bio 4, 542-553, 2014 | 33 | 2014 |
| Screening applications in drug discovery based on microfluidic technology P Eribol, AK Uguz, KO Ulgen Biomicrofluidics 10 (1), 011502, 2016 | 31 | 2016 |
| Understanding signaling in yeast: insights from network analysis KY Arga, Zİ Önsan, B Kırdar, KÖ Ülgen, J Nielsen Biotechnology and bioengineering 97 (5), 1246-1258, 2007 | 30 | 2007 |
| Flux analysis of recombinant Saccharomyces cerevisiae YPB-G utilizing starch for optimal ethanol production T Çakır, KY Arga, MM Altıntaş, KÖ Ülgen Process biochemistry 39 (12), 2097-2108, 2004 | 29 | 2004 |
| Systems biology of pathogen‐host interaction: Networks of protein‐protein interaction within pathogens and pathogen‐human interactions in the post‐genomic era SD Durmuş Tekir, KÖ Ülgen Biotechnology journal 8 (1), 85-96, 2013 | 26 | 2013 |
| Integration of metabolic modeling and phenotypic data in evaluation and improvement of ethanol production using respiration-deficient mutants of Saccharomyces cerevisiae D Dikicioglu, P Pir, ZI Onsan, KO Ulgen, B Kirdar, SG Oliver Appl. Environ. Microbiol. 74 (18), 5809-5816, 2008 | 26 | 2008 |
