Adam Paul Arkin
Adam Paul Arkin
Department of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.O
Verified email at lbl.gov - Homepage
Title
Cited by
Cited by
Year
FastTree 2–approximately maximum-likelihood trees for large alignments
MN Price, PS Dehal, AP Arkin
PloS one 5 (3), e9490, 2010
61462010
Functional profiling of the Saccharomyces cerevisiae genome
G Giaever, AM Chu, L Ni, C Connelly, L Riles, S Véronneau, S Dow, ...
nature 418 (6896), 387-391, 2002
42472002
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ...
Bioinformatics 19 (4), 524-531, 2003
33022003
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
LS Qi, MH Larson, LA Gilbert, JA Doudna, JS Weissman, AP Arkin, ...
Cell 152 (5), 1173-1183, 2013
32292013
FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
MN Price, PS Dehal, AP Arkin
Molecular biology and evolution 26 (7), 1641-1650, 2009
25342009
Stochastic mechanisms in gene expression
HH McAdams, A Arkin
Proceedings of the National Academy of Sciences 94 (3), 814-819, 1997
21711997
Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected Escherichia coli cells
A Arkin, J Ross, HH McAdams
Genetics 149 (4), 1633-1648, 1998
19451998
Control, exploitation and tolerance of intracellular noise
CV Rao, DM Wolf, AP Arkin
Nature 420 (6912), 231-237, 2002
11622002
It’sa noisy business! Genetic regulation at the nanomolar scale
HH McAdams, A Arkin
Trends in genetics 15 (2), 65-69, 1999
10201999
Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm
CV Rao, AP Arkin
The Journal of chemical physics 118 (11), 4999-5010, 2003
7392003
Environmentally controlled invasion of cancer cells by engineered bacteria
JC Anderson, EJ Clarke, AP Arkin, CA Voigt
Journal of molecular biology 355 (4), 619-627, 2006
6412006
Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity
LS Weinberger, JC Burnett, JE Toettcher, AP Arkin, DV Schaffer
Cell 122 (2), 169-182, 2005
5962005
Precise and reliable gene expression via standard transcription and translation initiation elements
VK Mutalik, JC Guimaraes, G Cambray, C Lam, MJ Christoffersen, QA Mai, ...
Nature methods 10 (4), 354-360, 2013
5462013
Chemogenomic profiling: identifying the functional interactions of small molecules in yeast
G Giaever, P Flaherty, J Kumm, M Proctor, C Nislow, DF Jaramillo, ...
Proceedings of the National Academy of Sciences 101 (3), 793-798, 2004
5162004
MicrobesOnline: an integrated portal for comparative and functional genomics
PS Dehal, MP Joachimiak, MN Price, JT Bates, JK Baumohl, D Chivian, ...
Nucleic acids research 38 (suppl_1), D396-D400, 2010
4322010
Environmental signal integration by a modular AND gate
JC Anderson, CA Voigt, AP Arkin
Molecular systems biology 3 (1), 133, 2007
4242007
A novel method for accurate operon predictions in all sequenced prokaryotes
MN Price, KH Huang, EJ Alm, AP Arkin
Nucleic acids research 33 (3), 880-892, 2005
4232005
Environmental genomics reveals a single-species ecosystem deep within Earth
D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ...
Science 322 (5899), 275-278, 2008
4062008
Biological networks
E Alm, AP Arkin
Current opinion in structural biology 13 (2), 193-202, 2003
3962003
Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations
M Samoilov, S Plyasunov, AP Arkin
Proceedings of the National Academy of Sciences 102 (7), 2310-2315, 2005
3792005
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Articles 1–20