Adam Paul Arkin
Adam Paul Arkin
Department of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.O
Verified email at lbl.gov - Homepage
TitleCited byYear
FastTree 2–approximately maximum-likelihood trees for large alignments
MN Price, PS Dehal, AP Arkin
PloS one 5 (3), e9490, 2010
46692010
Functional profiling of the Saccharomyces cerevisiae genome
G Giaever, AM Chu, L Ni, C Connelly, L Riles, S Veronneau, S Dow, ...
nature 418 (6896), 387, 2002
39632002
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ...
Bioinformatics 19 (4), 524-531, 2003
31402003
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
LS Qi, MH Larson, LA Gilbert, JA Doudna, JS Weissman, AP Arkin, ...
Cell 152 (5), 1173-1183, 2013
26332013
Stochastic mechanisms in gene expression
HH McAdams, A Arkin
Proceedings of the National Academy of Sciences 94 (3), 814-819, 1997
20791997
FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
MN Price, PS Dehal, AP Arkin
Molecular biology and evolution 26 (7), 1641-1650, 2009
20132009
Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected Escherichia coli cells
A Arkin, J Ross, HH McAdams
Genetics 149 (4), 1633-1648, 1998
18861998
Control, exploitation and tolerance of intracellular noise
CV Rao, DM Wolf, AP Arkin
Nature 420 (6912), 231, 2002
11382002
It’sa noisy business! Genetic regulation at the nanomolar scale
HH McAdams, A Arkin
Trends in genetics 15 (2), 65-69, 1999
9851999
Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm
CV Rao, AP Arkin
The Journal of chemical physics 118 (11), 4999-5010, 2003
7142003
Environmentally controlled invasion of cancer cells by engineered bacteria
JC Anderson, EJ Clarke, AP Arkin, CA Voigt
Journal of molecular biology 355 (4), 619-627, 2006
6012006
Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity
LS Weinberger, JC Burnett, JE Toettcher, AP Arkin, DV Schaffer
Cell 122 (2), 169-182, 2005
5472005
Chemogenomic profiling: identifying the functional interactions of small molecules in yeast
G Giaever, P Flaherty, J Kumm, M Proctor, C Nislow, DF Jaramillo, ...
Proceedings of the National Academy of Sciences 101 (3), 793-798, 2004
5022004
Precise and reliable gene expression via standard transcription and translation initiation elements
VK Mutalik, JC Guimaraes, G Cambray, C Lam, MJ Christoffersen, QA Mai, ...
Nature methods 10 (4), 354, 2013
4602013
Environmental signal integration by a modular AND gate
JC Anderson, CA Voigt, AP Arkin
Molecular systems biology 3 (1), 2007
4052007
A novel method for accurate operon predictions in all sequenced prokaryotes
MN Price, KH Huang, EJ Alm, AP Arkin
Nucleic acids research 33 (3), 880-892, 2005
4042005
MicrobesOnline: an integrated portal for comparative and functional genomics
PS Dehal, MP Joachimiak, MN Price, JT Bates, JK Baumohl, D Chivian, ...
Nucleic acids research 38 (suppl_1), D396-D400, 2009
4002009
Biological networks
E Alm, AP Arkin
Current opinion in structural biology 13 (2), 193-202, 2003
3922003
Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations
M Samoilov, S Plyasunov, AP Arkin
Proceedings of the National Academy of Sciences 102 (7), 2310-2315, 2005
3672005
Environmental genomics reveals a single-species ecosystem deep within Earth
D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ...
Science 322 (5899), 275-278, 2008
3632008
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Articles 1–20