Alberto Paccanaro
Alberto Paccanaro
Verified email at cs.rhul.ac.uk - Homepage
TitleCited byYear
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
NJ Krogan, G Cagney, H Yu, G Zhong, X Guo, A Ignatchenko, J Li, S Pu, ...
Nature 440 (7084), 637, 2006
28662006
Detecting overlapping protein complexes in protein-protein interaction networks
T Nepusz, H Yu, A Paccanaro
Nature methods 9 (5), 471, 2012
7552012
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221, 2013
5962013
A census of human soluble protein complexes
PC Havugimana, GT Hart, T Nepusz, H Yang, AL Turinsky, Z Li, PI Wang, ...
Cell 150 (5), 1068-1081, 2012
5422012
Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins
P Hu, SC Janga, M Babu, JJ Díaz-Mejía, G Butland, W Yang, O Pogoutse, ...
PLoS biology 7 (4), e1000096, 2009
3322009
Assessing the limits of genomic data integration for predicting protein networks
LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein
Genome research 15 (7), 945-953, 2005
2432005
Spectral clustering of protein sequences
A Paccanaro, JA Casbon, MAS Saqi
Nucleic acids research 34 (5), 1571-1580, 2006
1892006
Quantifying environmental adaptation of metabolic pathways in metagenomics
TA Gianoulis, J Raes, PV Patel, R Bjornson, JO Korbel, I Letunic, ...
Proceedings of the National Academy of Sciences 106 (5), 1374-1379, 2009
1802009
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 184, 2016
1722016
Predicting interactions in protein networks by completing defective cliques
H Yu, A Paccanaro, V Trifonov, M Gerstein
Bioinformatics 22 (7), 823-829, 2006
1682006
Clustering of Pseudomonas aeruginosa transcriptomes from planktonic cultures, developing and mature biofilms reveals distinct expression profiles
RD Waite, A Paccanaro, A Papakonstantinopoulou, JM Hurst, M Saqi, ...
BMC genomics 7 (1), 162, 2006
1422006
Predicting essential genes in fungal genomes
M Seringhaus, A Paccanaro, A Borneman, M Snyder, M Gerstein
Genome research 16 (9), 1126-1135, 2006
1192006
Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
ZD Zhang, A Paccanaro, Y Fu, S Weissman, Z Weng, J Chang, M Snyder, ...
Genome research 17 (6), 787-797, 2007
832007
Learning distributed representations of concepts using linear relational embedding
A Paccanaro, GE Hinton
IEEE Transactions on Knowledge and Data Engineering 13 (2), 232-244, 2001
802001
Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty
H Yang, T Nepusz, A Paccanaro
Bioinformatics 28 (10), 1383-1389, 2012
762012
OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast
P Abbruscato, T Nepusz, L Mizzi, M Del Corvo, P Morandini, I Fumasoni, ...
Molecular plant pathology 13 (8), 828-841, 2012
692012
Exploring the evolutionary path of plant MAPK networks
R Dóczi, L Ökrész, AE Romero, A Paccanaro, L Bögre
Trends in plant science 17 (9), 518-525, 2012
612012
SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale
T Nepusz, R Sasidharan, A Paccanaro
BMC bioinformatics 11 (1), 120, 2010
582010
Integration of curated databases to identify genotype-phenotype associations
CS Goh, TA Gianoulis, Y Liu, J Li, A Paccanaro, YA Lussier, M Gerstein
BMC genomics 7 (1), 257, 2006
522006
GOssTo: a stand-alone application and a web tool for calculating semantic similarities on the Gene Ontology
H Caniza, AE Romero, S Heron, H Yang, A Devoto, M Frasca, M Mesiti, ...
Bioinformatics 30 (15), 2235-2236, 2014
442014
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Articles 1–20