| Combining dependent P-values with an empirical adaptation of Brown’s method W Poole, DL Gibbs, I Shmulevich, B Bernard, TA Knijnenburg Bioinformatics 32 (17), i430-i436, 2016 | 149 | 2016 |
| Chemical boltzmann machines W Poole, A Ortiz-Munoz, A Behera, NS Jones, TE Ouldridge, E Winfree, ... DNA Computing and Molecular Programming: 23rd International Conference, DNA …, 2017 | 34 | 2017 |
| BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts W Poole, A Pandey, A Shur, ZA Tuza, RM Murray PLOS Computational Biology 18 (4), e1009987, 2022 | 29 | 2022 |
| Vivarium: an interface and engine for integrative multiscale modeling in computational biology E Agmon, RK Spangler, CJ Skalnik, W Poole, SM Peirce, JH Morrison, ... Bioinformatics 38 (7), 1972-1979, 2022 | 20 | 2022 |
| Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression W Poole, K Leinonen, I Shmulevich, TA Knijnenburg, B Bernard PLoS computational biology 13 (2), e1005347, 2017 | 18 | 2017 |
| Preserving the sequence of a biopolymer’s monomers as they enter an electrospray mass spectrometer W Maulbetsch, B Wiener, W Poole, J Bush, D Stein Physical Review Applied 6 (5), 054006, 2016 | 17 | 2016 |
| Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape A Swaminathan, W Poole, A Pandey, V Hsiao, RM Murray BioRxiv, 121152, 2017 | 11 | 2017 |
| EmpiricalBrownsMethod: Uses Brown’s Method to Combine p-Values from Dependent Tests W Poole R package version 1 (0), 2018 | 6 | 2018 |
| Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape A Pandey, W Poole, A Swaminathan, V Hsiao, RM Murray Journal of Open Source Software 8 (83), 5057, 2023 | 5 | 2023 |
| Characterization of integrase and excisionase activity in a cell-free protein expression system using a modeling and analysis pipeline A Pandey, ML Rodriguez, W Poole, RM Murray ACS Synthetic Biology 12 (2), 511-523, 2023 | 5 | 2023 |
| DNA computing and molecular programming W Poole, A Ortiz-Munoz, A Behera, NS Jones, TE Ouldridge, E Winfree, ... Springer, 2017 | 5 | 2017 |
| Detailed balanced chemical reaction networks as generalized Boltzmann machines W Poole, T Ouldridge, M Gopalkrishnan, E Winfree arXiv preprint arXiv:2205.06313, 2022 | 3 | 2022 |
| Compilation and Inference with Chemical Reaction Networks W Poole California Institute of Technology, 2022 | 3 | 2022 |
| In vitro convolutional neural networks W Poole Nature Machine Intelligence 4 (7), 614-615, 2022 | 2 | 2022 |
| Autonomous Learning of Generative Models with Chemical Reaction Network Ensembles W Poole, TE Ouldridge, M Gopalkrishnan arXiv preprint arXiv:2311.00975, 2023 | | 2023 |
| Supplementary Materials for Vivarium: an interface and engine for integrative multiscale modeling in computational biology E Agmon, RK Spangler, CJ Skalnik, W Poole, SM Peirce, JH Morrison, ... | | 2021 |
| Order Preservation Between Brownian Particles Modeled By Langevin Dynamics W Maulbetsch, W Poole, J Bush, D Stein APS March Meeting Abstracts 2013, A30. 011, 2013 | | 2013 |
Ilya ShmulevichProfessor, Institute for Systems BiologyVerified email at systemsbiology.org
