John Rinn
John Rinn
Verified email at colorado.edu - Homepage
TitleCited byYear
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ...
Nature protocols 7 (3), 562, 2012
73812012
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
RA Gupta, N Shah, KC Wang, J Kim, HM Horlings, DJ Wong, MC Tsai, ...
Nature 464 (7291), 1071, 2010
38932010
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
JL Rinn, M Kertesz, JK Wang, SL Squazzo, X Xu, SA Brugmann, ...
cell 129 (7), 1311-1323, 2007
35772007
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
M Guttman, I Amit, M Garber, C French, MF Lin, D Feldser, M Huarte, ...
Nature 458 (7235), 223, 2009
33532009
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
M Guttman, I Amit, M Garber, C French, MF Lin, D Feldser, M Huarte, ...
Nature 458 (7235), 223, 2009
33532009
Genome regulation by long noncoding RNAs
JL Rinn, HY Chang
Annual review of biochemistry 81, 145-166, 2012
25112012
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
AM Khalil, M Guttman, M Huarte, M Garber, A Raj, DR Morales, K Thomas, ...
Proceedings of the National Academy of Sciences 106 (28), 11667-11672, 2009
24242009
Differential analysis of gene regulation at transcript resolution with RNA-seq
C Trapnell, DG Hendrickson, M Sauvageau, L Goff, JL Rinn, L Pachter
Nature biotechnology 31 (1), 46, 2013
23402013
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
MN Cabili, C Trapnell, L Goff, M Koziol, B Tazon-Vega, A Regev, JL Rinn
Genes & development 25 (18), 1915-1927, 2011
23282011
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
M Huarte, M Guttman, D Feldser, M Garber, MJ Koziol, ...
Cell 142 (3), 409-419, 2010
16582010
lincRNAs act in the circuitry controlling pluripotency and differentiation
M Guttman, J Donaghey, BW Carey, M Garber, JK Grenier, G Munson, ...
Nature 477 (7364), 295, 2011
15982011
Modular regulatory principles of large non-coding RNAs
M Guttman, JL Rinn
Nature 482 (7385), 339, 2012
14032012
The multilayered complexity of ceRNA crosstalk and competition
Y Tay, J Rinn, PP Pandolfi
Nature 505 (7483), 344-352, 2014
12132014
Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
M Guttman, M Garber, JZ Levin, J Donaghey, J Robinson, X Adiconis, ...
Nature biotechnology 28 (5), 503, 2010
11842010
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
C Trapnell, D Cacchiarelli, J Grimsby, P Pokharel, S Li, M Morse, ...
Nature biotechnology 32 (4), 381, 2014
11832014
Global identification of human transcribed sequences with genome tiling arrays
P Bertone, V Stolc, TE Royce, JS Rozowsky, AE Urban, X Zhu, JL Rinn, ...
Science 306 (5705), 2242-2246, 2004
11332004
Improving RNA-Seq expression estimates by correcting for fragment bias
A Roberts, C Trapnell, J Donaghey, JL Rinn, L Pachter
Genome biology 12 (3), R22, 2011
8142011
Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
S Loewer, MN Cabili, M Guttman, YH Loh, K Thomas, IH Park, M Garber, ...
Nature genetics 42 (12), 1113, 2010
7622010
A histone H3 lysine 27 demethylase regulates animal posterior development
F Lan, PE Bayliss, JL Rinn, JR Whetstine, JK Wang, S Chen, S Iwase, ...
Nature 449 (7163), 689, 2007
6622007
Genome-wide measurement of RNA secondary structure in yeast
M Kertesz, Y Wan, E Mazor, JL Rinn, RC Nutter, HY Chang, E Segal
Nature 467 (7311), 103, 2010
6372010
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