Aaron Berlin
Aaron Berlin
Senior Bioinformatic Scientist, ArcherDx
Verified email at archerdx.com
Title
Cited by
Cited by
Year
Genome sequence, comparative analysis and haplotype structure of the domestic dog
K Lindblad-Toh, CM Wade, TS Mikkelsen, EK Karlsson, DB Jaffe, ...
Nature 438 (7069), 803-819, 2005
25622005
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
nature 450 (7167), 203, 2007
20002007
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
S Gnerre, I MacCallum, D Przybylski, FJ Ribeiro, JN Burton, BJ Walker, ...
Proceedings of the National Academy of Sciences 108 (4), 1513-1518, 2011
16522011
The genomic substrate for adaptive radiation in African cichlid fish
D Brawand, CE Wagner, YI Li, M Malinsky, I Keller, S Fan, O Simakov, ...
Nature 513 (7518), 375-381, 2014
7132014
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ...
Nature 447 (7141), 167-177, 2007
7052007
A catalog of reference genomes from the human microbiome
Human Microbiome Jumpstart Reference Strains Consortium
Science 328 (5981), 994-999, 2010
7012010
The African coelacanth genome provides insights into tetrapod evolution
CT Amemiya, J Alföldi, AP Lee, S Fan, H Philippe, I MacCallum, I Braasch, ...
Nature 496 (7445), 311-316, 2013
5732013
Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes
DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ...
Science 347 (6217), 2015
4342015
Comparative functional genomics of the fission yeasts
N Rhind, Z Chen, M Yassour, DA Thompson, BJ Haas, N Habib, ...
Science 332 (6032), 930-936, 2011
4242011
Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer
A Fujimoto, M Furuta, Y Totoki, T Tsunoda, M Kato, Y Shiraishi, H Tanaka, ...
Nature genetics 48 (5), 500-509, 2016
4182016
Naturally occurring dominant resistance mutations to hepatitis C virus protease and polymerase inhibitors in treatment‐naive patients
T Kuntzen, J Timm, A Berical, N Lennon, AM Berlin, SK Young, B Lee, ...
Hepatology 48 (6), 1769-1778, 2008
4132008
Comparative analysis of RNA sequencing methods for degraded or low-input samples
X Adiconis, D Borges-Rivera, R Satija, DS DeLuca, MA Busby, AM Berlin, ...
Nature methods 10 (7), 623, 2013
3792013
A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries
S Fisher, A Barry, J Abreu, B Minie, J Nolan, TM Delorey, G Young, ...
Genome biology 12 (1), 1-15, 2011
3772011
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
I Braasch, AR Gehrke, JJ Smith, K Kawasaki, T Manousaki, J Pasquier, ...
Nature genetics 48 (4), 427-437, 2016
3732016
Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection
MR Henn, CL Boutwell, P Charlebois, NJ Lennon, KA Power, ...
PLoS Pathog 8 (3), e1002529, 2012
3572012
Whole genome amplification and de novo assembly of single bacterial cells
S Rodrigue, RR Malmstrom, AM Berlin, BW Birren, MR Henn, ...
PloS one 4 (9), e6864, 2009
3022009
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4‐like myoviruses from diverse hosts and environments
MB Sullivan, KH Huang, JC Ignacio‐Espinoza, AM Berlin, L Kelly, ...
Environmental microbiology 12 (11), 3035-3056, 2010
2702010
Finished bacterial genomes from shotgun sequence data
FJ Ribeiro, D Przybylski, S Yin, T Sharpe, S Gnerre, A Abouelleil, ...
Genome research 22 (11), 2270-2277, 2012
2262012
Genetic and phenotypic intra-species variation in Candida albicans
MP Hirakawa, DA Martinez, S Sakthikumar, MZ Anderson, A Berlin, ...
Genome research 25 (3), 413-425, 2015
1892015
An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts
MP Hoeppner, A Lundquist, M Pirun, JRS Meadows, N Zamani, ...
PloS one 9 (3), e91172, 2014
1772014
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