| MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis J Chong, O Soufan, C Li, I Caraus, S Li, G Bourque, DS Wishart, J Xia Nucleic Acids Research (doi: 10.1093/nar/gky310), 2018 | 3591 | 2018 |
| HMDB 3.0—the human metabolome database in 2013 DS Wishart, T Jewison, AC Guo, M Wilson, C Knox, Y Liu, Y Djoumbou, ... Nucleic acids research 41 (D1), D801-D807, 2012 | 3305 | 2012 |
| MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights Z Pang, J Chong, G Zhou, D Morais, L Chang, M Barrette, C Gauthier, ... Nucleic Acids Research (10.1093/nar/gkab382), 2021 | 3057 | 2021 |
| MetaboAnalyst 3.0—making metabolomics more meaningful J Xia, IV Sinelnikov, B Han, DS Wishart Nucleic acids research 43 (W1), W251-W257, 2015 | 2937 | 2015 |
| HMDB: a knowledgebase for the human metabolome DS Wishart, C Knox, AC Guo, R Eisner, N Young, B Gautam, DD Hau, ... Nucleic acids research 37 (suppl_1), D603-D610, 2009 | 2198 | 2009 |
| MetaboAnalyst: a web server for metabolomic data analysis and interpretation J Xia, N Psychogios, N Young, DS Wishart Nucleic acids research 37 (suppl_2), W652-W660, 2009 | 2185 | 2009 |
| Using MetaboAnalyst 4.0 for Comprehensive and Integrative Metabolomics Data Analysis J Chong, DS Wishart, J Xia Current Protocols in Bioinformatics 68 (e86), 1-128, 2019 | 2087 | 2019 |
| The human serum metabolome N Psychogios, DD Hau, J Peng, AC Guo, R Mandal, S Bouatra, ... PloS one 6 (2), e16957, 2011 | 1892 | 2011 |
| Using MetaboAnalyst 3.0 for comprehensive metabolomics data analysis J Xia, DS Wishart Current protocols in bioinformatics 55 (1), 14.10. 1-14.10. 91, 2016 | 1663 | 2016 |
| MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data A Dhariwal, J Chong, S Habib, IL King, LB Agellon, J Xia Nucleic Acids Research, doi: 10.1093/nar/gkx295, 2017 | 1646 | 2017 |
| NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis G Zhou, O Soufan, J Ewald, REW Hancock, N Basu, J Xia Nucleic Acids Research (doi: 10.1093/nar/gkz240), 2019 | 1470 | 2019 |
| Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data J Chong, P Liu, G Zhou, J Xia Nature Protocols 15, 799–821, 2020 | 1331 | 2020 |
| MetaboAnalyst 2.0—a comprehensive server for metabolomic data analysis J Xia, R Mandal, IV Sinelnikov, D Broadhurst, DS Wishart Nucleic acids research 40 (W1), W127-W133, 2012 | 1331 | 2012 |
| Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst J Xia, DS Wishart Nature protocols 6 (6), 743-760, 2011 | 1200 | 2011 |
| Translational biomarker discovery in clinical metabolomics: an introductory tutorial J Xia, DI Broadhurst, M Wilson, DS Wishart Metabolomics 9, 280-299, 2013 | 1016 | 2013 |
| NetworkAnalyst for statistical, visual and network-based meta-analysis of gene expression data J Xia, EE Gill, REW Hancock Nature protocols 10 (6), 823-844, 2015 | 868 | 2015 |
| Using MetaboAnalyst 5.0 for LC–HRMS spectra processing, multi-omics integration and covariate adjustment of global metabolomics data Z Pang, G Zhou, J Ewald, L Chang, O Hacariz, N Basu, J Xia Nature Protocols, (10.1038/s41596-022-00710-w), 2022 | 861 | 2022 |
| MetPA: a web-based metabolomics tool for pathway analysis and visualization J Xia, DS Wishart Bioinformatics 26 (18), 2342-2344, 2010 | 759 | 2010 |
| MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data J Xia, DS Wishart Nucleic acids research 38 (suppl_2), W71-W77, 2010 | 744 | 2010 |
| MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data J Chong, J Xia Bioinformatics (doi: 10.1093/bioinformatics/bty528), 2018 | 635 | 2018 |
